Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13870 and ABZR86_RS13875 are separated by 91 nucleotides ABZR86_RS13875 and ABZR86_RS13880 are separated by 189 nucleotides ABZR86_RS13880 and ABZR86_RS13885 are separated by 11 nucleotides
ABZR86_RS13870: ABZR86_RS13870 - DNA-processing protein DprA, at 3,091,956 to 3,093,086
_RS13870
ABZR86_RS13875: ABZR86_RS13875 - LysM domain-containing protein, at 3,093,178 to 3,094,302
_RS13875
ABZR86_RS13880: ABZR86_RS13880 - peptide deformylase, at 3,094,492 to 3,095,001
_RS13880
ABZR86_RS13885: ABZR86_RS13885 - methionyl-tRNA formyltransferase, at 3,095,013 to 3,095,939
_RS13885
Position (kb)
3093
3094
3095 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.309 kb on + strand, within ABZR86_RS13870 at 3092.310 kb on - strand, within ABZR86_RS13870 at 3092.310 kb on - strand, within ABZR86_RS13870 at 3093.071 kb on + strand at 3093.071 kb on + strand at 3093.071 kb on + strand at 3093.071 kb on + strand at 3093.071 kb on + strand at 3093.072 kb on - strand at 3093.072 kb on - strand at 3093.072 kb on - strand at 3093.098 kb on + strand at 3093.098 kb on + strand at 3093.098 kb on + strand at 3093.098 kb on + strand at 3093.099 kb on - strand at 3093.099 kb on - strand at 3093.099 kb on - strand at 3093.180 kb on - strand at 3093.180 kb on - strand at 3093.180 kb on - strand at 3093.180 kb on - strand at 3093.242 kb on + strand at 3093.242 kb on + strand at 3093.242 kb on + strand at 3093.242 kb on + strand at 3093.242 kb on + strand at 3093.242 kb on + strand at 3093.242 kb on + strand at 3093.243 kb on - strand at 3093.243 kb on - strand at 3093.243 kb on - strand at 3093.243 kb on - strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.274 kb on + strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.275 kb on - strand at 3093.383 kb on + strand, within ABZR86_RS13875 at 3093.383 kb on + strand, within ABZR86_RS13875 at 3093.384 kb on - strand, within ABZR86_RS13875 at 3093.384 kb on - strand, within ABZR86_RS13875 at 3093.384 kb on - strand, within ABZR86_RS13875 at 3093.518 kb on + strand, within ABZR86_RS13875 at 3093.518 kb on + strand, within ABZR86_RS13875 at 3093.519 kb on - strand, within ABZR86_RS13875 at 3093.519 kb on - strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.521 kb on + strand, within ABZR86_RS13875 at 3093.522 kb on + strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.522 kb on - strand, within ABZR86_RS13875 at 3093.524 kb on + strand, within ABZR86_RS13875 at 3093.524 kb on + strand, within ABZR86_RS13875 at 3093.524 kb on + strand, within ABZR86_RS13875 at 3093.524 kb on + strand, within ABZR86_RS13875 at 3093.525 kb on - strand, within ABZR86_RS13875 at 3093.533 kb on + strand, within ABZR86_RS13875 at 3093.533 kb on + strand, within ABZR86_RS13875 at 3093.533 kb on + strand, within ABZR86_RS13875 at 3093.534 kb on - strand, within ABZR86_RS13875 at 3093.534 kb on - strand, within ABZR86_RS13875 at 3093.656 kb on + strand, within ABZR86_RS13875 at 3093.683 kb on + strand, within ABZR86_RS13875 at 3093.683 kb on + strand, within ABZR86_RS13875 at 3093.683 kb on + strand, within ABZR86_RS13875 at 3093.683 kb on + strand, within ABZR86_RS13875 at 3093.767 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.866 kb on + strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.867 kb on - strand, within ABZR86_RS13875 at 3093.920 kb on + strand, within ABZR86_RS13875 at 3093.920 kb on + strand, within ABZR86_RS13875 at 3093.920 kb on + strand, within ABZR86_RS13875 at 3093.920 kb on + strand, within ABZR86_RS13875 at 3093.920 kb on + strand, within ABZR86_RS13875 at 3093.921 kb on - strand, within ABZR86_RS13875 at 3093.921 kb on - strand, within ABZR86_RS13875 at 3093.921 kb on - strand, within ABZR86_RS13875 at 3093.921 kb on - strand, within ABZR86_RS13875 at 3094.088 kb on + strand, within ABZR86_RS13875 at 3094.088 kb on + strand, within ABZR86_RS13875 at 3094.173 kb on + strand, within ABZR86_RS13875 at 3094.174 kb on - strand, within ABZR86_RS13875 at 3094.174 kb on - strand, within ABZR86_RS13875 at 3094.205 kb on + strand at 3094.205 kb on + strand at 3094.205 kb on + strand at 3094.206 kb on - strand at 3094.247 kb on + strand at 3094.248 kb on - strand at 3094.248 kb on - strand at 3094.248 kb on - strand at 3094.296 kb on + strand at 3094.296 kb on + strand at 3094.296 kb on + strand at 3094.297 kb on - strand at 3094.297 kb on - strand at 3094.297 kb on - strand at 3094.302 kb on + strand at 3094.303 kb on - strand at 3094.342 kb on - strand at 3094.342 kb on - strand at 3094.342 kb on - strand at 3094.412 kb on + strand at 3094.412 kb on + strand at 3094.412 kb on + strand at 3094.412 kb on + strand at 3094.413 kb on - strand at 3094.413 kb on - strand at 3094.429 kb on + strand at 3094.429 kb on + strand at 3094.430 kb on - strand at 3094.509 kb on + strand at 3094.610 kb on - strand, within ABZR86_RS13880 at 3094.928 kb on - strand, within ABZR86_RS13880 at 3094.928 kb on - strand, within ABZR86_RS13880 at 3094.928 kb on - strand, within ABZR86_RS13880 at 3094.928 kb on - strand, within ABZR86_RS13880
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 3,092,309 + ABZR86_RS13870 0.31 -1.0 3,092,309 + ABZR86_RS13870 0.31 +0.1 3,092,309 + ABZR86_RS13870 0.31 -0.3 3,092,309 + ABZR86_RS13870 0.31 -0.5 3,092,309 + ABZR86_RS13870 0.31 -1.4 3,092,310 - ABZR86_RS13870 0.31 -0.4 3,092,310 - ABZR86_RS13870 0.31 -0.9 3,093,071 + -0.6 3,093,071 + -0.1 3,093,071 + +0.1 3,093,071 + +0.6 3,093,071 + +0.7 3,093,072 - -0.3 3,093,072 - +0.0 3,093,072 - -0.8 3,093,098 + -0.3 3,093,098 + -0.1 3,093,098 + +1.8 3,093,098 + -0.0 3,093,099 - +0.4 3,093,099 - -0.1 3,093,099 - -0.3 3,093,180 - +0.3 3,093,180 - -0.3 3,093,180 - -0.5 3,093,180 - -0.1 3,093,242 + +0.9 3,093,242 + +0.2 3,093,242 + +1.9 3,093,242 + +0.7 3,093,242 + +2.4 3,093,242 + -0.7 3,093,242 + -0.3 3,093,243 - +1.5 3,093,243 - +0.7 3,093,243 - +0.8 3,093,243 - +1.2 3,093,274 + +0.2 3,093,274 + -1.5 3,093,274 + +0.5 3,093,274 + -1.1 3,093,274 + +0.0 3,093,274 + -0.1 3,093,274 + -0.3 3,093,274 + +0.3 3,093,274 + -0.2 3,093,274 + +0.0 3,093,274 + -0.1 3,093,275 - +0.1 3,093,275 - +0.0 3,093,275 - +0.7 3,093,275 - +0.3 3,093,275 - -0.1 3,093,275 - +0.5 3,093,275 - +0.4 3,093,275 - -0.4 3,093,275 - -0.1 3,093,275 - +0.3 3,093,275 - +1.0 3,093,275 - +0.4 3,093,383 + ABZR86_RS13875 0.18 +0.0 3,093,383 + ABZR86_RS13875 0.18 +0.0 3,093,384 - ABZR86_RS13875 0.18 +0.7 3,093,384 - ABZR86_RS13875 0.18 -0.1 3,093,384 - ABZR86_RS13875 0.18 +0.8 3,093,518 + ABZR86_RS13875 0.30 +0.8 3,093,518 + ABZR86_RS13875 0.30 -0.4 3,093,519 - ABZR86_RS13875 0.30 +0.2 3,093,519 - ABZR86_RS13875 0.30 -0.6 3,093,521 + ABZR86_RS13875 0.30 +2.1 3,093,521 + ABZR86_RS13875 0.30 -0.0 3,093,521 + ABZR86_RS13875 0.30 -0.7 3,093,521 + ABZR86_RS13875 0.30 -0.0 3,093,521 + ABZR86_RS13875 0.30 +0.4 3,093,521 + ABZR86_RS13875 0.30 -0.4 3,093,521 + ABZR86_RS13875 0.30 +0.4 3,093,521 + ABZR86_RS13875 0.30 +0.2 3,093,521 + ABZR86_RS13875 0.30 +0.0 3,093,521 + ABZR86_RS13875 0.30 -0.4 3,093,521 + ABZR86_RS13875 0.30 +0.5 3,093,521 + ABZR86_RS13875 0.30 +0.6 3,093,521 + ABZR86_RS13875 0.30 +0.8 3,093,521 + ABZR86_RS13875 0.30 +0.5 3,093,521 + ABZR86_RS13875 0.30 +0.1 3,093,521 + ABZR86_RS13875 0.30 +1.3 3,093,521 + ABZR86_RS13875 0.30 +0.8 3,093,521 + ABZR86_RS13875 0.30 +0.1 3,093,521 + ABZR86_RS13875 0.30 +0.5 3,093,521 + ABZR86_RS13875 0.30 -0.6 3,093,522 + ABZR86_RS13875 0.31 -0.1 3,093,522 - ABZR86_RS13875 0.31 +0.7 3,093,522 - ABZR86_RS13875 0.31 +0.6 3,093,522 - ABZR86_RS13875 0.31 +0.2 3,093,522 - ABZR86_RS13875 0.31 -1.1 3,093,522 - ABZR86_RS13875 0.31 +0.7 3,093,522 - ABZR86_RS13875 0.31 -2.0 3,093,522 - ABZR86_RS13875 0.31 +0.3 3,093,522 - ABZR86_RS13875 0.31 -0.4 3,093,522 - ABZR86_RS13875 0.31 +0.2 3,093,522 - ABZR86_RS13875 0.31 -0.8 3,093,522 - ABZR86_RS13875 0.31 -0.2 3,093,522 - ABZR86_RS13875 0.31 +0.5 3,093,522 - ABZR86_RS13875 0.31 -0.3 3,093,522 - ABZR86_RS13875 0.31 +0.9 3,093,522 - ABZR86_RS13875 0.31 +0.2 3,093,522 - ABZR86_RS13875 0.31 +0.1 3,093,524 + ABZR86_RS13875 0.31 +0.4 3,093,524 + ABZR86_RS13875 0.31 -0.8 3,093,524 + ABZR86_RS13875 0.31 -0.1 3,093,524 + ABZR86_RS13875 0.31 +0.6 3,093,525 - ABZR86_RS13875 0.31 -0.1 3,093,533 + ABZR86_RS13875 0.32 +1.0 3,093,533 + ABZR86_RS13875 0.32 +0.0 3,093,533 + ABZR86_RS13875 0.32 +0.2 3,093,534 - ABZR86_RS13875 0.32 -0.5 3,093,534 - ABZR86_RS13875 0.32 -0.0 3,093,656 + ABZR86_RS13875 0.42 +0.7 3,093,683 + ABZR86_RS13875 0.45 +0.6 3,093,683 + ABZR86_RS13875 0.45 -0.6 3,093,683 + ABZR86_RS13875 0.45 +0.5 3,093,683 + ABZR86_RS13875 0.45 -0.0 3,093,767 + ABZR86_RS13875 0.52 +0.1 3,093,866 + ABZR86_RS13875 0.61 -1.9 3,093,866 + ABZR86_RS13875 0.61 +0.7 3,093,866 + ABZR86_RS13875 0.61 +0.2 3,093,866 + ABZR86_RS13875 0.61 +0.2 3,093,866 + ABZR86_RS13875 0.61 -0.3 3,093,866 + ABZR86_RS13875 0.61 +0.3 3,093,866 + ABZR86_RS13875 0.61 +0.8 3,093,866 + ABZR86_RS13875 0.61 -0.1 3,093,866 + ABZR86_RS13875 0.61 +0.2 3,093,866 + ABZR86_RS13875 0.61 +0.4 3,093,866 + ABZR86_RS13875 0.61 +0.4 3,093,866 + ABZR86_RS13875 0.61 +0.1 3,093,867 - ABZR86_RS13875 0.61 -0.0 3,093,867 - ABZR86_RS13875 0.61 +0.6 3,093,867 - ABZR86_RS13875 0.61 -0.1 3,093,867 - ABZR86_RS13875 0.61 +0.2 3,093,867 - ABZR86_RS13875 0.61 -0.0 3,093,867 - ABZR86_RS13875 0.61 -0.2 3,093,867 - ABZR86_RS13875 0.61 +0.4 3,093,867 - ABZR86_RS13875 0.61 -0.4 3,093,867 - ABZR86_RS13875 0.61 -0.3 3,093,867 - ABZR86_RS13875 0.61 +0.7 3,093,867 - ABZR86_RS13875 0.61 -0.3 3,093,867 - ABZR86_RS13875 0.61 +1.1 3,093,920 + ABZR86_RS13875 0.66 -0.1 3,093,920 + ABZR86_RS13875 0.66 +1.4 3,093,920 + ABZR86_RS13875 0.66 +0.0 3,093,920 + ABZR86_RS13875 0.66 +0.2 3,093,920 + ABZR86_RS13875 0.66 +0.3 3,093,921 - ABZR86_RS13875 0.66 +0.3 3,093,921 - ABZR86_RS13875 0.66 +0.6 3,093,921 - ABZR86_RS13875 0.66 +0.1 3,093,921 - ABZR86_RS13875 0.66 +0.4 3,094,088 + ABZR86_RS13875 0.81 +0.6 3,094,088 + ABZR86_RS13875 0.81 +0.0 3,094,173 + ABZR86_RS13875 0.88 -0.5 3,094,174 - ABZR86_RS13875 0.89 +0.5 3,094,174 - ABZR86_RS13875 0.89 -0.3 3,094,205 + -0.6 3,094,205 + -0.3 3,094,205 + -0.7 3,094,206 - -0.6 3,094,247 + +0.3 3,094,248 - +0.6 3,094,248 - +0.1 3,094,248 - +1.1 3,094,296 + -0.7 3,094,296 + -0.1 3,094,296 + +0.3 3,094,297 - +1.4 3,094,297 - -0.1 3,094,297 - -0.2 3,094,302 + -0.8 3,094,303 - +0.1 3,094,342 - +0.2 3,094,342 - -0.5 3,094,342 - +1.0 3,094,412 + +0.9 3,094,412 + -0.3 3,094,412 + -0.3 3,094,412 + -0.7 3,094,413 - -0.6 3,094,413 - -0.2 3,094,429 + +0.2 3,094,429 + +0.5 3,094,430 - -0.9 3,094,509 + -0.6 3,094,610 - ABZR86_RS13880 0.23 -0.3 3,094,928 - ABZR86_RS13880 0.85 -1.1 3,094,928 - ABZR86_RS13880 0.85 -0.8 3,094,928 - ABZR86_RS13880 0.85 -1.9 3,094,928 - ABZR86_RS13880 0.85 -1.6
Or see this region's nucleotide sequence