Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4052 and Shewana3_4053 are separated by 93 nucleotides Shewana3_4053 and Shewana3_4054 are separated by 167 nucleotides Shewana3_4054 and Shewana3_4055 are separated by 504 nucleotides
Shewana3_4052: Shewana3_4052 - hypothetical protein (RefSeq), at 4,869,032 to 4,869,820
_4052
Shewana3_4053: Shewana3_4053 - hypothetical protein (RefSeq), at 4,869,914 to 4,870,429
_4053
Shewana3_4054: Shewana3_4054 - glutathione reductase (RefSeq), at 4,870,597 to 4,871,952
_4054
Shewana3_4055: Shewana3_4055 - sodium/proline symporter (RefSeq), at 4,872,457 to 4,873,953
_4055
Position (kb)
4870
4871
4872 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4870.034 kb on - strand, within Shewana3_4053 at 4870.501 kb on - strand at 4870.684 kb on - strand at 4870.788 kb on + strand, within Shewana3_4054 at 4870.873 kb on - strand, within Shewana3_4054 at 4870.896 kb on - strand, within Shewana3_4054 at 4870.934 kb on - strand, within Shewana3_4054 at 4870.961 kb on + strand, within Shewana3_4054 at 4871.065 kb on - strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.173 kb on + strand, within Shewana3_4054 at 4871.261 kb on + strand, within Shewana3_4054 at 4871.266 kb on + strand, within Shewana3_4054 at 4871.266 kb on + strand, within Shewana3_4054 at 4871.269 kb on - strand, within Shewana3_4054 at 4871.269 kb on - strand, within Shewana3_4054 at 4871.512 kb on - strand, within Shewana3_4054 at 4871.527 kb on - strand, within Shewana3_4054 at 4871.589 kb on - strand, within Shewana3_4054 at 4871.691 kb on - strand, within Shewana3_4054 at 4871.714 kb on + strand, within Shewana3_4054 at 4871.778 kb on + strand, within Shewana3_4054 at 4871.852 kb on + strand at 4871.968 kb on - strand at 4872.517 kb on - strand at 4872.566 kb on - strand at 4872.596 kb on - strand at 4872.648 kb on - strand, within Shewana3_4055 at 4872.683 kb on + strand, within Shewana3_4055 at 4872.689 kb on - strand, within Shewana3_4055
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 4,870,034 - Shewana3_4053 0.23 -0.3 4,870,501 - -0.2 4,870,684 - -0.9 4,870,788 + Shewana3_4054 0.14 -1.1 4,870,873 - Shewana3_4054 0.20 -1.0 4,870,896 - Shewana3_4054 0.22 -1.8 4,870,934 - Shewana3_4054 0.25 -0.3 4,870,961 + Shewana3_4054 0.27 -1.7 4,871,065 - Shewana3_4054 0.35 -1.5 4,871,094 + Shewana3_4054 0.37 -1.8 4,871,094 + Shewana3_4054 0.37 -1.4 4,871,094 + Shewana3_4054 0.37 -1.4 4,871,094 + Shewana3_4054 0.37 -1.8 4,871,094 + Shewana3_4054 0.37 -0.3 4,871,173 + Shewana3_4054 0.42 -1.7 4,871,261 + Shewana3_4054 0.49 -4.6 4,871,266 + Shewana3_4054 0.49 -1.3 4,871,266 + Shewana3_4054 0.49 -1.0 4,871,269 - Shewana3_4054 0.50 -1.1 4,871,269 - Shewana3_4054 0.50 -1.7 4,871,512 - Shewana3_4054 0.67 -1.2 4,871,527 - Shewana3_4054 0.69 -1.2 4,871,589 - Shewana3_4054 0.73 -1.9 4,871,691 - Shewana3_4054 0.81 -1.2 4,871,714 + Shewana3_4054 0.82 -1.9 4,871,778 + Shewana3_4054 0.87 -1.4 4,871,852 + -0.9 4,871,968 - -0.1 4,872,517 - -0.1 4,872,566 - -0.2 4,872,596 - -0.8 4,872,648 - Shewana3_4055 0.13 -0.3 4,872,683 + Shewana3_4055 0.15 -0.2 4,872,689 - Shewana3_4055 0.15 -0.3
Or see this region's nucleotide sequence