Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3883
Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.125 vol% |
---|---|---|---|---|---|
remove | |||||
4,662,230 | + | Shewana3_3881 | 0.17 | +0.2 | |
4,662,238 | - | Shewana3_3881 | 0.19 | +0.7 | |
4,662,382 | - | Shewana3_3881 | 0.63 | +0.4 | |
4,662,629 | - | +0.7 | |||
4,662,666 | + | -2.2 | |||
4,662,677 | + | Shewana3_3882 | 0.11 | -2.4 | |
4,662,782 | + | Shewana3_3882 | 0.29 | -1.9 | |
4,662,845 | + | Shewana3_3882 | 0.40 | -1.4 | |
4,663,002 | + | Shewana3_3882 | 0.66 | -1.6 | |
4,663,037 | - | Shewana3_3882 | 0.72 | +0.1 | |
4,663,099 | + | Shewana3_3882 | 0.82 | -2.0 | |
4,663,201 | + | +0.1 | |||
4,663,226 | - | -1.2 | |||
4,663,424 | + | Shewana3_3883 | 0.40 | -0.2 | |
4,663,436 | + | Shewana3_3883 | 0.42 | -0.3 | |
4,663,583 | + | Shewana3_3883 | 0.68 | +0.6 | |
4,663,612 | + | Shewana3_3883 | 0.73 | -0.2 | |
4,663,695 | - | Shewana3_3883 | 0.87 | -1.2 | |
4,663,722 | - | -0.7 | |||
4,663,727 | - | -0.9 | |||
4,664,109 | - | Shewana3_3884 | 0.35 | -0.2 | |
4,664,149 | - | Shewana3_3884 | 0.40 | +0.5 | |
4,664,184 | - | Shewana3_3884 | 0.43 | -0.2 | |
4,664,185 | - | Shewana3_3884 | 0.44 | -0.4 | |
4,664,277 | - | Shewana3_3884 | 0.54 | -0.8 | |
4,664,349 | + | Shewana3_3884 | 0.61 | -0.8 | |
4,664,357 | - | Shewana3_3884 | 0.62 | +0.1 | |
4,664,493 | + | Shewana3_3884 | 0.77 | -0.0 |
Or see this region's nucleotide sequence