Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3880 and Shewana3_3881 overlap by 4 nucleotides Shewana3_3881 and Shewana3_3882 are separated by 106 nucleotides Shewana3_3882 and Shewana3_3883 overlap by 4 nucleotides
Shewana3_3880: Shewana3_3880 - LppC family lipoprotein (RefSeq), at 4,660,296 to 4,662,179
_3880
Shewana3_3881: Shewana3_3881 - hypothetical protein (RefSeq), at 4,662,176 to 4,662,502
_3881
Shewana3_3882: Shewana3_3882 - phosphoheptose isomerase (RefSeq), at 4,662,609 to 4,663,202
_3882
Shewana3_3883: Shewana3_3883 - transport-associated (RefSeq), at 4,663,199 to 4,663,765
_3883
Position (kb) 4662
4663 Strain fitness (log2 ratio) -2
-1
0
1 at 4661.821 kb on + strand, within Shewana3_3880 at 4661.848 kb on + strand, within Shewana3_3880 at 4662.230 kb on + strand, within Shewana3_3881 at 4662.238 kb on - strand, within Shewana3_3881 at 4662.382 kb on - strand, within Shewana3_3881 at 4662.629 kb on - strand at 4662.666 kb on + strand at 4662.677 kb on + strand, within Shewana3_3882 at 4662.782 kb on + strand, within Shewana3_3882 at 4662.845 kb on + strand, within Shewana3_3882 at 4663.002 kb on + strand, within Shewana3_3882 at 4663.037 kb on - strand, within Shewana3_3882 at 4663.099 kb on + strand, within Shewana3_3882 at 4663.201 kb on + strand at 4663.226 kb on - strand at 4663.424 kb on + strand, within Shewana3_3883 at 4663.436 kb on + strand, within Shewana3_3883
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 4,661,821 + Shewana3_3880 0.81 -1.4 4,661,848 + Shewana3_3880 0.82 -0.9 4,662,230 + Shewana3_3881 0.17 +0.2 4,662,238 - Shewana3_3881 0.19 +0.7 4,662,382 - Shewana3_3881 0.63 +0.4 4,662,629 - +0.7 4,662,666 + -2.2 4,662,677 + Shewana3_3882 0.11 -2.4 4,662,782 + Shewana3_3882 0.29 -1.9 4,662,845 + Shewana3_3882 0.40 -1.4 4,663,002 + Shewana3_3882 0.66 -1.6 4,663,037 - Shewana3_3882 0.72 +0.1 4,663,099 + Shewana3_3882 0.82 -2.0 4,663,201 + +0.1 4,663,226 - -1.2 4,663,424 + Shewana3_3883 0.40 -0.2 4,663,436 + Shewana3_3883 0.42 -0.3
Or see this region's nucleotide sequence