Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3817 and Shewana3_3818 overlap by 1 nucleotides Shewana3_3818 and Shewana3_3819 are separated by 5 nucleotides Shewana3_3819 and Shewana3_3820 are separated by 216 nucleotides
Shewana3_3817: Shewana3_3817 - putative signal transduction histidine kinase (RefSeq), at 4,584,084 to 4,585,163
_3817
Shewana3_3818: Shewana3_3818 - two component LuxR family transcriptional regulator (RefSeq), at 4,585,163 to 4,585,759
_3818
Shewana3_3819: Shewana3_3819 - hypothetical protein (RefSeq), at 4,585,765 to 4,586,880
_3819
Shewana3_3820: Shewana3_3820 - Mg chelatase, subunit ChlI (RefSeq), at 4,587,097 to 4,588,623
_3820
Position (kb)
4585
4586
4587 Strain fitness (log2 ratio)
-2
-1
0
1 at 4584.782 kb on - strand, within Shewana3_3817 at 4585.100 kb on - strand at 4585.116 kb on + strand at 4585.218 kb on + strand at 4585.225 kb on - strand, within Shewana3_3818 at 4585.225 kb on - strand, within Shewana3_3818 at 4585.271 kb on + strand, within Shewana3_3818 at 4585.271 kb on + strand, within Shewana3_3818 at 4585.348 kb on + strand, within Shewana3_3818 at 4585.348 kb on - strand, within Shewana3_3818 at 4585.418 kb on + strand, within Shewana3_3818 at 4585.752 kb on + strand at 4585.807 kb on + strand at 4585.807 kb on + strand at 4585.873 kb on - strand at 4585.873 kb on - strand at 4585.873 kb on - strand at 4585.873 kb on - strand at 4586.084 kb on - strand, within Shewana3_3819 at 4586.223 kb on - strand, within Shewana3_3819 at 4586.522 kb on - strand, within Shewana3_3819 at 4586.610 kb on - strand, within Shewana3_3819 at 4586.669 kb on + strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.742 kb on - strand, within Shewana3_3819 at 4586.749 kb on + strand, within Shewana3_3819 at 4586.817 kb on - strand at 4586.982 kb on - strand at 4587.100 kb on + strand at 4587.238 kb on + strand at 4587.246 kb on - strand at 4587.348 kb on - strand, within Shewana3_3820 at 4587.422 kb on + strand, within Shewana3_3820 at 4587.563 kb on - strand, within Shewana3_3820 at 4587.694 kb on - strand, within Shewana3_3820 at 4587.827 kb on - strand, within Shewana3_3820
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 4,584,782 - Shewana3_3817 0.65 -1.9 4,585,100 - +0.3 4,585,116 + -0.1 4,585,218 + -1.2 4,585,225 - Shewana3_3818 0.10 +0.3 4,585,225 - Shewana3_3818 0.10 +0.1 4,585,271 + Shewana3_3818 0.18 +0.1 4,585,271 + Shewana3_3818 0.18 -0.3 4,585,348 + Shewana3_3818 0.31 -0.7 4,585,348 - Shewana3_3818 0.31 -0.1 4,585,418 + Shewana3_3818 0.43 -1.7 4,585,752 + -0.2 4,585,807 + -0.0 4,585,807 + +0.1 4,585,873 - -0.0 4,585,873 - -0.5 4,585,873 - +0.3 4,585,873 - +0.4 4,586,084 - Shewana3_3819 0.29 -0.1 4,586,223 - Shewana3_3819 0.41 +0.5 4,586,522 - Shewana3_3819 0.68 -0.4 4,586,610 - Shewana3_3819 0.76 +0.3 4,586,669 + Shewana3_3819 0.81 +0.2 4,586,742 - Shewana3_3819 0.88 -2.0 4,586,742 - Shewana3_3819 0.88 -0.0 4,586,742 - Shewana3_3819 0.88 +0.2 4,586,742 - Shewana3_3819 0.88 +0.3 4,586,749 + Shewana3_3819 0.88 +0.6 4,586,817 - -0.8 4,586,982 - -0.0 4,587,100 + +0.0 4,587,238 + +0.4 4,587,246 - +0.6 4,587,348 - Shewana3_3820 0.16 +0.2 4,587,422 + Shewana3_3820 0.21 +0.0 4,587,563 - Shewana3_3820 0.31 -0.2 4,587,694 - Shewana3_3820 0.39 +0.0 4,587,827 - Shewana3_3820 0.48 -0.1
Or see this region's nucleotide sequence