Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3509 and Shewana3_3510 are separated by 290 nucleotides Shewana3_3510 and Shewana3_3511 are separated by 223 nucleotides Shewana3_3511 and Shewana3_3512 are separated by 103 nucleotides
Shewana3_3509: Shewana3_3509 - malate dehydrogenase (RefSeq), at 4,209,397 to 4,210,332
_3509
Shewana3_3510: Shewana3_3510 - arginine repressor (RefSeq), at 4,210,623 to 4,211,093
_3510
Shewana3_3511: Shewana3_3511 - NAD-dependent epimerase/dehydratase (RefSeq), at 4,211,317 to 4,211,949
_3511
Shewana3_3512: Shewana3_3512 - transcriptional regulator (RefSeq), at 4,212,053 to 4,212,955
_3512
Position (kb)
4210
4211
4212 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4209.650 kb on + strand, within Shewana3_3509 at 4209.991 kb on + strand, within Shewana3_3509 at 4210.083 kb on - strand, within Shewana3_3509 at 4210.129 kb on + strand, within Shewana3_3509 at 4210.312 kb on + strand at 4210.326 kb on + strand at 4210.452 kb on + strand at 4210.522 kb on - strand at 4210.613 kb on + strand at 4210.621 kb on - strand at 4210.818 kb on + strand, within Shewana3_3510 at 4210.919 kb on + strand, within Shewana3_3510 at 4210.924 kb on + strand, within Shewana3_3510 at 4210.937 kb on + strand, within Shewana3_3510 at 4211.123 kb on + strand at 4211.259 kb on + strand at 4211.386 kb on - strand, within Shewana3_3511 at 4211.563 kb on + strand, within Shewana3_3511 at 4211.625 kb on + strand, within Shewana3_3511 at 4211.805 kb on + strand, within Shewana3_3511 at 4211.805 kb on + strand, within Shewana3_3511 at 4211.871 kb on + strand, within Shewana3_3511 at 4211.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 4,209,650 + Shewana3_3509 0.27 -3.3 4,209,991 + Shewana3_3509 0.63 -1.5 4,210,083 - Shewana3_3509 0.73 -1.3 4,210,129 + Shewana3_3509 0.78 -0.7 4,210,312 + -1.9 4,210,326 + -1.9 4,210,452 + +0.5 4,210,522 - +0.4 4,210,613 + +0.6 4,210,621 - -0.9 4,210,818 + Shewana3_3510 0.41 -1.6 4,210,919 + Shewana3_3510 0.63 -0.8 4,210,924 + Shewana3_3510 0.64 -2.0 4,210,937 + Shewana3_3510 0.67 -0.8 4,211,123 + +0.6 4,211,259 + +0.3 4,211,386 - Shewana3_3511 0.11 +0.3 4,211,563 + Shewana3_3511 0.39 +0.7 4,211,625 + Shewana3_3511 0.49 -1.5 4,211,805 + Shewana3_3511 0.77 -0.4 4,211,805 + Shewana3_3511 0.77 -0.1 4,211,871 + Shewana3_3511 0.88 -0.5 4,211,930 + -0.9
Or see this region's nucleotide sequence