Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3447 and Shewana3_3448 are separated by 513 nucleotides Shewana3_3448 and Shewana3_3449 are separated by 78 nucleotides
Shewana3_3447: Shewana3_3447 - 16S rRNA m(2)G 1207 methyltransferase (RefSeq), at 4,129,854 to 4,130,915
_3447
Shewana3_3448: Shewana3_3448 - hypothetical protein (RefSeq), at 4,131,429 to 4,131,998
_3448
Shewana3_3449: Shewana3_3449 - hypothetical protein (RefSeq), at 4,132,077 to 4,132,910
_3449
Position (kb)
4131
4132 Strain fitness (log2 ratio)
-1
0
1 at 4130.434 kb on + strand, within Shewana3_3447 at 4130.499 kb on + strand, within Shewana3_3447 at 4130.543 kb on + strand, within Shewana3_3447 at 4130.927 kb on + strand at 4130.935 kb on - strand at 4130.993 kb on + strand at 4131.061 kb on + strand at 4131.061 kb on + strand at 4131.098 kb on + strand at 4131.104 kb on - strand at 4131.104 kb on - strand at 4131.104 kb on - strand at 4131.178 kb on + strand at 4131.252 kb on - strand at 4131.256 kb on + strand at 4131.464 kb on - strand at 4131.474 kb on - strand at 4131.626 kb on + strand, within Shewana3_3448 at 4131.642 kb on + strand, within Shewana3_3448 at 4131.688 kb on + strand, within Shewana3_3448 at 4131.735 kb on - strand, within Shewana3_3448 at 4131.751 kb on - strand, within Shewana3_3448 at 4131.850 kb on + strand, within Shewana3_3448 at 4131.873 kb on + strand, within Shewana3_3448 at 4132.067 kb on - strand at 4132.119 kb on + strand at 4132.230 kb on - strand, within Shewana3_3449 at 4132.277 kb on - strand, within Shewana3_3449 at 4132.286 kb on + strand, within Shewana3_3449 at 4132.286 kb on + strand, within Shewana3_3449 at 4132.289 kb on - strand, within Shewana3_3449 at 4132.486 kb on + strand, within Shewana3_3449 at 4132.661 kb on + strand, within Shewana3_3449 at 4132.664 kb on + strand, within Shewana3_3449 at 4132.708 kb on + strand, within Shewana3_3449 at 4132.716 kb on - strand, within Shewana3_3449 at 4132.716 kb on - strand, within Shewana3_3449 at 4132.716 kb on - strand, within Shewana3_3449 at 4132.717 kb on - strand, within Shewana3_3449 at 4132.717 kb on - strand, within Shewana3_3449 at 4132.723 kb on + strand, within Shewana3_3449 at 4132.723 kb on + strand, within Shewana3_3449 at 4132.731 kb on - strand, within Shewana3_3449 at 4132.854 kb on + strand at 4132.863 kb on - strand at 4132.874 kb on - strand at 4132.917 kb on + strand at 4132.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 4,130,434 + Shewana3_3447 0.55 +0.4 4,130,499 + Shewana3_3447 0.61 +1.1 4,130,543 + Shewana3_3447 0.65 +0.8 4,130,927 + -1.4 4,130,935 - -1.1 4,130,993 + -1.6 4,131,061 + -0.6 4,131,061 + +0.5 4,131,098 + -0.5 4,131,104 - -0.2 4,131,104 - +0.3 4,131,104 - +0.8 4,131,178 + -1.2 4,131,252 - +0.3 4,131,256 + -1.5 4,131,464 - -0.6 4,131,474 - -1.4 4,131,626 + Shewana3_3448 0.35 -1.2 4,131,642 + Shewana3_3448 0.37 -0.1 4,131,688 + Shewana3_3448 0.45 +0.6 4,131,735 - Shewana3_3448 0.54 -1.2 4,131,751 - Shewana3_3448 0.56 -1.2 4,131,850 + Shewana3_3448 0.74 -0.2 4,131,873 + Shewana3_3448 0.78 -0.7 4,132,067 - -1.4 4,132,119 + -0.6 4,132,230 - Shewana3_3449 0.18 -0.5 4,132,277 - Shewana3_3449 0.24 -0.7 4,132,286 + Shewana3_3449 0.25 +0.0 4,132,286 + Shewana3_3449 0.25 -0.2 4,132,289 - Shewana3_3449 0.25 -1.5 4,132,486 + Shewana3_3449 0.49 -1.5 4,132,661 + Shewana3_3449 0.70 +0.8 4,132,664 + Shewana3_3449 0.70 +0.1 4,132,708 + Shewana3_3449 0.76 -1.4 4,132,716 - Shewana3_3449 0.77 -0.3 4,132,716 - Shewana3_3449 0.77 +0.1 4,132,716 - Shewana3_3449 0.77 +0.3 4,132,717 - Shewana3_3449 0.77 -0.2 4,132,717 - Shewana3_3449 0.77 +0.1 4,132,723 + Shewana3_3449 0.77 -0.4 4,132,723 + Shewana3_3449 0.77 +0.1 4,132,731 - Shewana3_3449 0.78 +0.6 4,132,854 + -0.0 4,132,863 - -0.4 4,132,874 - -0.5 4,132,917 + -1.1 4,132,925 - +0.6
Or see this region's nucleotide sequence