Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3172 and Shewana3_R0121 are separated by 219 nucleotides Shewana3_R0121 and Shewana3_R0122 are separated by 55 nucleotides Shewana3_R0122 and Shewana3_R0123 are separated by 44 nucleotides Shewana3_R0123 and Shewana3_3173 are separated by 163 nucleotides Shewana3_3173 and Shewana3_3174 are separated by 166 nucleotides
Shewana3_3172: Shewana3_3172 - putative lipoprotein (RefSeq), at 3,811,687 to 3,812,535
_3172
Shewana3_R0121: Shewana3_R0121 - tRNA-Phe (RefSeq), at 3,812,755 to 3,812,830
_R0121
Shewana3_R0122: Shewana3_R0122 - tRNA-Leu (RefSeq), at 3,812,886 to 3,812,972
_R0122
Shewana3_R0123: Shewana3_R0123 - tRNA-Leu (RefSeq), at 3,813,017 to 3,813,103
_R0123
Shewana3_3173: Shewana3_3173 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,813,267 to 3,814,892
_3173
Shewana3_3174: Shewana3_3174 - globin (RefSeq), at 3,815,059 to 3,816,252
_3174
Position (kb)
3813
3814
3815 Strain fitness (log2 ratio)
-2
-1
0
1 at 3812.915 kb on + strand, within Shewana3_R0122 at 3812.948 kb on + strand, within Shewana3_R0122 at 3812.957 kb on + strand, within Shewana3_R0122 at 3813.163 kb on + strand at 3813.220 kb on + strand at 3813.238 kb on - strand at 3813.238 kb on - strand at 3813.719 kb on + strand, within Shewana3_3173 at 3813.879 kb on - strand, within Shewana3_3173 at 3813.935 kb on + strand, within Shewana3_3173 at 3813.955 kb on + strand, within Shewana3_3173 at 3814.017 kb on + strand, within Shewana3_3173 at 3814.017 kb on + strand, within Shewana3_3173 at 3814.082 kb on + strand, within Shewana3_3173 at 3814.240 kb on + strand, within Shewana3_3173 at 3814.250 kb on - strand, within Shewana3_3173 at 3814.473 kb on + strand, within Shewana3_3173 at 3814.475 kb on - strand, within Shewana3_3173 at 3814.480 kb on + strand, within Shewana3_3173 at 3814.488 kb on - strand, within Shewana3_3173 at 3814.507 kb on + strand, within Shewana3_3173 at 3814.543 kb on + strand, within Shewana3_3173 at 3814.572 kb on - strand, within Shewana3_3173 at 3814.604 kb on + strand, within Shewana3_3173 at 3814.749 kb on - strand at 3814.887 kb on - strand at 3815.114 kb on - strand at 3815.229 kb on + strand, within Shewana3_3174 at 3815.229 kb on + strand, within Shewana3_3174 at 3815.229 kb on + strand, within Shewana3_3174 at 3815.229 kb on + strand, within Shewana3_3174 at 3815.239 kb on + strand, within Shewana3_3174 at 3815.287 kb on + strand, within Shewana3_3174 at 3815.518 kb on - strand, within Shewana3_3174 at 3815.518 kb on - strand, within Shewana3_3174 at 3815.648 kb on + strand, within Shewana3_3174 at 3815.712 kb on - strand, within Shewana3_3174 at 3815.738 kb on - strand, within Shewana3_3174 at 3815.791 kb on + strand, within Shewana3_3174
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 3,812,915 + Shewana3_R0122 0.33 -1.0 3,812,948 + Shewana3_R0122 0.71 -0.5 3,812,957 + Shewana3_R0122 0.82 +0.2 3,813,163 + -1.1 3,813,220 + +0.4 3,813,238 - +0.5 3,813,238 - -2.0 3,813,719 + Shewana3_3173 0.28 -0.6 3,813,879 - Shewana3_3173 0.38 +0.7 3,813,935 + Shewana3_3173 0.41 +0.7 3,813,955 + Shewana3_3173 0.42 -0.4 3,814,017 + Shewana3_3173 0.46 -0.5 3,814,017 + Shewana3_3173 0.46 -0.1 3,814,082 + Shewana3_3173 0.50 -0.2 3,814,240 + Shewana3_3173 0.60 +1.2 3,814,250 - Shewana3_3173 0.60 -0.3 3,814,473 + Shewana3_3173 0.74 -0.0 3,814,475 - Shewana3_3173 0.74 +1.2 3,814,480 + Shewana3_3173 0.75 -0.2 3,814,488 - Shewana3_3173 0.75 +0.2 3,814,507 + Shewana3_3173 0.76 +0.5 3,814,543 + Shewana3_3173 0.78 +0.1 3,814,572 - Shewana3_3173 0.80 -2.0 3,814,604 + Shewana3_3173 0.82 -0.5 3,814,749 - -0.6 3,814,887 - +0.3 3,815,114 - +0.1 3,815,229 + Shewana3_3174 0.14 -0.2 3,815,229 + Shewana3_3174 0.14 +0.4 3,815,229 + Shewana3_3174 0.14 -1.7 3,815,229 + Shewana3_3174 0.14 -0.4 3,815,239 + Shewana3_3174 0.15 -1.0 3,815,287 + Shewana3_3174 0.19 -0.9 3,815,518 - Shewana3_3174 0.38 -0.7 3,815,518 - Shewana3_3174 0.38 -0.3 3,815,648 + Shewana3_3174 0.49 -0.1 3,815,712 - Shewana3_3174 0.55 -1.8 3,815,738 - Shewana3_3174 0.57 +0.2 3,815,791 + Shewana3_3174 0.61 -0.9
Or see this region's nucleotide sequence