Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3078

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3077 and Shewana3_3078 are separated by 623 nucleotidesShewana3_3078 and Shewana3_3079 are separated by 84 nucleotidesShewana3_3079 and Shewana3_3080 are separated by 18 nucleotides Shewana3_3077: Shewana3_3077 - major outer membrane lipoprotein, putative (RefSeq), at 3,691,127 to 3,691,393 _3077 Shewana3_3078: Shewana3_3078 - ribosomal RNA large subunit methyltransferase A, putative (RefSeq), at 3,692,017 to 3,692,856 _3078 Shewana3_3079: Shewana3_3079 - undecaprenyl pyrophosphate phosphatase (RefSeq), at 3,692,941 to 3,693,741 _3079 Shewana3_3080: Shewana3_3080 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,693,760 to 3,694,269 _3080 Position (kb) 3692 3693Strain fitness (log2 ratio) -3 -2 -1 0 1at 3691.169 kb on + strand, within Shewana3_3077at 3691.185 kb on + strand, within Shewana3_3077at 3691.192 kb on + strand, within Shewana3_3077at 3691.215 kb on + strand, within Shewana3_3077at 3691.215 kb on + strand, within Shewana3_3077at 3691.274 kb on + strand, within Shewana3_3077at 3691.288 kb on + strand, within Shewana3_3077at 3691.297 kb on + strand, within Shewana3_3077at 3691.547 kb on - strandat 3691.565 kb on + strandat 3691.573 kb on - strandat 3691.573 kb on - strandat 3691.573 kb on - strandat 3691.573 kb on - strandat 3691.583 kb on + strandat 3691.616 kb on + strandat 3691.616 kb on + strandat 3691.624 kb on - strandat 3691.647 kb on - strandat 3691.744 kb on + strandat 3692.016 kb on + strandat 3692.024 kb on - strandat 3692.081 kb on + strandat 3692.117 kb on - strand, within Shewana3_3078at 3692.253 kb on + strand, within Shewana3_3078at 3692.378 kb on + strand, within Shewana3_3078at 3692.415 kb on + strand, within Shewana3_3078at 3692.446 kb on + strand, within Shewana3_3078at 3692.447 kb on - strand, within Shewana3_3078at 3693.224 kb on + strand, within Shewana3_3079at 3693.277 kb on + strand, within Shewana3_3079at 3693.368 kb on + strand, within Shewana3_3079at 3693.399 kb on - strand, within Shewana3_3079at 3693.496 kb on - strand, within Shewana3_3079at 3693.512 kb on + strand, within Shewana3_3079at 3693.606 kb on - strand, within Shewana3_3079at 3693.617 kb on - strand, within Shewana3_3079at 3693.627 kb on + strand, within Shewana3_3079at 3693.630 kb on - strand, within Shewana3_3079at 3693.783 kb on + strandat 3693.828 kb on - strand, within Shewana3_3080

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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3,691,169 + Shewana3_3077 0.16 -0.8
3,691,185 + Shewana3_3077 0.22 -0.1
3,691,192 + Shewana3_3077 0.24 +0.4
3,691,215 + Shewana3_3077 0.33 -0.3
3,691,215 + Shewana3_3077 0.33 -0.2
3,691,274 + Shewana3_3077 0.55 -0.4
3,691,288 + Shewana3_3077 0.60 +0.3
3,691,297 + Shewana3_3077 0.64 +0.3
3,691,547 - -1.3
3,691,565 + +0.7
3,691,573 - +0.7
3,691,573 - -0.5
3,691,573 - -0.2
3,691,573 - -1.9
3,691,583 + -0.6
3,691,616 + -0.3
3,691,616 + -0.6
3,691,624 - -1.7
3,691,647 - -2.2
3,691,744 + -1.4
3,692,016 + -1.3
3,692,024 - -0.7
3,692,081 + -1.4
3,692,117 - Shewana3_3078 0.12 +0.5
3,692,253 + Shewana3_3078 0.28 -1.4
3,692,378 + Shewana3_3078 0.43 +0.6
3,692,415 + Shewana3_3078 0.47 +1.2
3,692,446 + Shewana3_3078 0.51 -1.1
3,692,447 - Shewana3_3078 0.51 +0.5
3,693,224 + Shewana3_3079 0.35 +0.7
3,693,277 + Shewana3_3079 0.42 +1.7
3,693,368 + Shewana3_3079 0.53 +0.1
3,693,399 - Shewana3_3079 0.57 -0.3
3,693,496 - Shewana3_3079 0.69 -3.4
3,693,512 + Shewana3_3079 0.71 +1.7
3,693,606 - Shewana3_3079 0.83 +0.5
3,693,617 - Shewana3_3079 0.84 -2.0
3,693,627 + Shewana3_3079 0.86 -0.3
3,693,630 - Shewana3_3079 0.86 -1.3
3,693,783 + +0.1
3,693,828 - Shewana3_3080 0.13 +0.6

Or see this region's nucleotide sequence