Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2970

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2969 and Shewana3_2970 are separated by 246 nucleotidesShewana3_2970 and Shewana3_2971 are separated by 255 nucleotidesShewana3_2971 and Shewana3_2972 are separated by 20 nucleotides Shewana3_2969: Shewana3_2969 - transglutaminase domain-containing protein (RefSeq), at 3,569,325 to 3,570,464 _2969 Shewana3_2970: Shewana3_2970 - HAAAP family transport protein (RefSeq), at 3,570,711 to 3,571,982 _2970 Shewana3_2971: Shewana3_2971 - putative endoribonuclease L-PSP (RefSeq), at 3,572,238 to 3,572,621 _2971 Shewana3_2972: Shewana3_2972 - hypothetical protein (RefSeq), at 3,572,642 to 3,573,916 _2972 Position (kb) 3570 3571 3572Strain fitness (log2 ratio) -2 -1 0 1at 3569.878 kb on + strand, within Shewana3_2969at 3569.992 kb on + strand, within Shewana3_2969at 3570.365 kb on - strandat 3570.366 kb on + strandat 3570.585 kb on - strandat 3570.592 kb on - strandat 3570.744 kb on + strandat 3570.835 kb on - strandat 3570.835 kb on - strandat 3570.915 kb on - strand, within Shewana3_2970at 3571.091 kb on + strand, within Shewana3_2970at 3571.099 kb on - strand, within Shewana3_2970at 3571.099 kb on - strand, within Shewana3_2970at 3571.209 kb on - strand, within Shewana3_2970at 3571.316 kb on + strand, within Shewana3_2970at 3571.406 kb on - strand, within Shewana3_2970at 3571.447 kb on - strand, within Shewana3_2970at 3571.481 kb on + strand, within Shewana3_2970at 3571.550 kb on + strand, within Shewana3_2970at 3571.983 kb on + strandat 3572.266 kb on + strandat 3572.364 kb on + strand, within Shewana3_2971at 3572.696 kb on + strandat 3572.697 kb on + strandat 3572.820 kb on + strand, within Shewana3_2972

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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3,569,878 + Shewana3_2969 0.49 -2.5
3,569,992 + Shewana3_2969 0.59 -1.0
3,570,365 - +0.1
3,570,366 + +0.7
3,570,585 - +0.2
3,570,592 - +0.4
3,570,744 + +0.7
3,570,835 - -0.1
3,570,835 - -0.1
3,570,915 - Shewana3_2970 0.16 +0.7
3,571,091 + Shewana3_2970 0.30 -0.5
3,571,099 - Shewana3_2970 0.31 +0.3
3,571,099 - Shewana3_2970 0.31 +0.2
3,571,209 - Shewana3_2970 0.39 -0.7
3,571,316 + Shewana3_2970 0.48 -0.9
3,571,406 - Shewana3_2970 0.55 +0.3
3,571,447 - Shewana3_2970 0.58 +0.7
3,571,481 + Shewana3_2970 0.61 -0.9
3,571,550 + Shewana3_2970 0.66 -0.2
3,571,983 + +0.1
3,572,266 + -0.4
3,572,364 + Shewana3_2971 0.33 -0.0
3,572,696 + -1.9
3,572,697 + +0.7
3,572,820 + Shewana3_2972 0.14 -0.1

Or see this region's nucleotide sequence