Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2944 and Shewana3_2945 are separated by 68 nucleotides Shewana3_2945 and Shewana3_2946 are separated by 223 nucleotides
Shewana3_2944: Shewana3_2944 - TonB-dependent receptor (RefSeq), at 3,535,861 to 3,538,332
_2944
Shewana3_2945: Shewana3_2945 - potassium efflux system protein (RefSeq), at 3,538,401 to 3,540,170
_2945
Shewana3_2946: Shewana3_2946 - diguanylate cyclase (RefSeq), at 3,540,394 to 3,542,121
_2946
Position (kb)
3538
3539
3540
3541 Strain fitness (log2 ratio)
-1
0
1 at 3537.499 kb on - strand at 3537.589 kb on + strand, within Shewana3_2944 at 3537.589 kb on + strand, within Shewana3_2944 at 3537.597 kb on - strand, within Shewana3_2944 at 3537.652 kb on + strand, within Shewana3_2944 at 3537.669 kb on - strand, within Shewana3_2944 at 3537.827 kb on - strand, within Shewana3_2944 at 3537.837 kb on - strand, within Shewana3_2944 at 3538.034 kb on + strand, within Shewana3_2944 at 3538.081 kb on + strand, within Shewana3_2944 at 3538.097 kb on - strand at 3538.154 kb on - strand at 3538.445 kb on - strand at 3538.479 kb on + strand at 3538.642 kb on - strand, within Shewana3_2945 at 3538.646 kb on + strand, within Shewana3_2945 at 3538.646 kb on + strand, within Shewana3_2945 at 3538.654 kb on - strand, within Shewana3_2945 at 3538.988 kb on + strand at 3538.988 kb on + strand, within Shewana3_2945 at 3538.996 kb on - strand, within Shewana3_2945 at 3539.125 kb on - strand, within Shewana3_2945 at 3539.186 kb on + strand, within Shewana3_2945 at 3539.394 kb on - strand, within Shewana3_2945 at 3539.485 kb on - strand, within Shewana3_2945 at 3539.616 kb on + strand, within Shewana3_2945 at 3539.616 kb on + strand, within Shewana3_2945 at 3539.745 kb on + strand, within Shewana3_2945 at 3539.745 kb on + strand, within Shewana3_2945 at 3539.799 kb on + strand, within Shewana3_2945 at 3539.825 kb on - strand, within Shewana3_2945 at 3539.956 kb on - strand, within Shewana3_2945 at 3540.140 kb on + strand at 3540.148 kb on - strand at 3540.148 kb on - strand at 3540.517 kb on + strand at 3540.537 kb on - strand at 3540.685 kb on - strand, within Shewana3_2946 at 3540.827 kb on - strand, within Shewana3_2946 at 3540.930 kb on - strand, within Shewana3_2946 at 3541.064 kb on - strand, within Shewana3_2946 at 3541.075 kb on + strand, within Shewana3_2946 at 3541.083 kb on - strand, within Shewana3_2946
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 3,537,499 - +1.7 3,537,589 + Shewana3_2944 0.70 +1.1 3,537,589 + Shewana3_2944 0.70 +1.4 3,537,597 - Shewana3_2944 0.70 +1.0 3,537,652 + Shewana3_2944 0.72 +1.4 3,537,669 - Shewana3_2944 0.73 +1.7 3,537,827 - Shewana3_2944 0.80 +1.7 3,537,837 - Shewana3_2944 0.80 -0.3 3,538,034 + Shewana3_2944 0.88 +1.1 3,538,081 + Shewana3_2944 0.90 +1.2 3,538,097 - -0.9 3,538,154 - +0.7 3,538,445 - -0.2 3,538,479 + -0.2 3,538,642 - Shewana3_2945 0.14 -0.0 3,538,646 + Shewana3_2945 0.14 +0.7 3,538,646 + Shewana3_2945 0.14 -0.3 3,538,654 - Shewana3_2945 0.14 -0.3 3,538,988 + +1.7 3,538,988 + Shewana3_2945 0.33 +0.6 3,538,996 - Shewana3_2945 0.34 -1.0 3,539,125 - Shewana3_2945 0.41 -0.2 3,539,186 + Shewana3_2945 0.44 +0.7 3,539,394 - Shewana3_2945 0.56 +0.2 3,539,485 - Shewana3_2945 0.61 -0.2 3,539,616 + Shewana3_2945 0.69 +0.1 3,539,616 + Shewana3_2945 0.69 -0.8 3,539,745 + Shewana3_2945 0.76 +1.1 3,539,745 + Shewana3_2945 0.76 -0.6 3,539,799 + Shewana3_2945 0.79 +0.1 3,539,825 - Shewana3_2945 0.80 -0.6 3,539,956 - Shewana3_2945 0.88 -1.5 3,540,140 + -1.2 3,540,148 - +0.7 3,540,148 - +0.0 3,540,517 + -0.1 3,540,537 - -0.5 3,540,685 - Shewana3_2946 0.17 +0.7 3,540,827 - Shewana3_2946 0.25 +0.4 3,540,930 - Shewana3_2946 0.31 +0.0 3,541,064 - Shewana3_2946 0.39 -0.1 3,541,075 + Shewana3_2946 0.39 -0.2 3,541,083 - Shewana3_2946 0.40 -0.0
Or see this region's nucleotide sequence