Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2860 and Shewana3_2861 are separated by 81 nucleotides Shewana3_2861 and Shewana3_2862 are separated by 134 nucleotides
Shewana3_2860: Shewana3_2860 - major facilitator transporter (RefSeq), at 3,419,079 to 3,420,275
_2860
Shewana3_2861: Shewana3_2861 - PhnA protein (RefSeq), at 3,420,357 to 3,420,920
_2861
Shewana3_2862: Shewana3_2862 - TonB-dependent heme/hemoglobin receptor family protein (RefSeq), at 3,421,055 to 3,423,268
_2862
Position (kb)
3420
3421 Strain fitness (log2 ratio)
-2
-1
0
1 at 3419.390 kb on + strand, within Shewana3_2860 at 3419.393 kb on - strand, within Shewana3_2860 at 3419.403 kb on - strand, within Shewana3_2860 at 3419.403 kb on - strand, within Shewana3_2860 at 3419.411 kb on - strand, within Shewana3_2860 at 3419.427 kb on - strand, within Shewana3_2860 at 3419.429 kb on + strand, within Shewana3_2860 at 3419.437 kb on - strand, within Shewana3_2860 at 3419.437 kb on - strand, within Shewana3_2860 at 3419.502 kb on - strand, within Shewana3_2860 at 3419.580 kb on + strand, within Shewana3_2860 at 3419.607 kb on - strand, within Shewana3_2860 at 3419.775 kb on - strand, within Shewana3_2860 at 3419.775 kb on - strand, within Shewana3_2860 at 3419.814 kb on + strand, within Shewana3_2860 at 3419.814 kb on + strand, within Shewana3_2860 at 3419.822 kb on - strand, within Shewana3_2860 at 3419.829 kb on - strand, within Shewana3_2860 at 3420.103 kb on - strand, within Shewana3_2860 at 3420.103 kb on - strand, within Shewana3_2860 at 3420.240 kb on + strand at 3420.241 kb on + strand at 3420.241 kb on + strand at 3420.254 kb on - strand at 3420.332 kb on + strand at 3420.340 kb on + strand at 3420.355 kb on + strand at 3420.558 kb on + strand, within Shewana3_2861 at 3420.696 kb on + strand, within Shewana3_2861 at 3420.873 kb on + strand at 3420.873 kb on + strand at 3421.068 kb on + strand at 3421.165 kb on + strand at 3421.173 kb on - strand at 3421.241 kb on - strand at 3421.335 kb on + strand, within Shewana3_2862 at 3421.469 kb on + strand, within Shewana3_2862 at 3421.524 kb on - strand, within Shewana3_2862 at 3421.669 kb on + strand, within Shewana3_2862 at 3421.669 kb on + strand, within Shewana3_2862 at 3421.669 kb on + strand, within Shewana3_2862 at 3421.677 kb on - strand, within Shewana3_2862 at 3421.677 kb on - strand, within Shewana3_2862 at 3421.856 kb on - strand, within Shewana3_2862 at 3421.868 kb on - strand, within Shewana3_2862
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 3,419,390 + Shewana3_2860 0.26 -0.3 3,419,393 - Shewana3_2860 0.26 -0.1 3,419,403 - Shewana3_2860 0.27 +0.5 3,419,403 - Shewana3_2860 0.27 -1.1 3,419,411 - Shewana3_2860 0.28 +0.1 3,419,427 - Shewana3_2860 0.29 -0.2 3,419,429 + Shewana3_2860 0.29 +0.7 3,419,437 - Shewana3_2860 0.30 -0.3 3,419,437 - Shewana3_2860 0.30 -0.3 3,419,502 - Shewana3_2860 0.35 -0.5 3,419,580 + Shewana3_2860 0.42 +0.6 3,419,607 - Shewana3_2860 0.44 +0.5 3,419,775 - Shewana3_2860 0.58 -0.7 3,419,775 - Shewana3_2860 0.58 +0.1 3,419,814 + Shewana3_2860 0.61 -0.5 3,419,814 + Shewana3_2860 0.61 +1.0 3,419,822 - Shewana3_2860 0.62 +0.0 3,419,829 - Shewana3_2860 0.63 -1.4 3,420,103 - Shewana3_2860 0.86 -0.5 3,420,103 - Shewana3_2860 0.86 -0.4 3,420,240 + +0.8 3,420,241 + -0.0 3,420,241 + +0.8 3,420,254 - +0.0 3,420,332 + -1.6 3,420,340 + -0.8 3,420,355 + +0.5 3,420,558 + Shewana3_2861 0.36 -1.3 3,420,696 + Shewana3_2861 0.60 +0.1 3,420,873 + +1.7 3,420,873 + +0.7 3,421,068 + -0.9 3,421,165 + +0.3 3,421,173 - -1.0 3,421,241 - +0.4 3,421,335 + Shewana3_2862 0.13 +0.4 3,421,469 + Shewana3_2862 0.19 +0.0 3,421,524 - Shewana3_2862 0.21 +0.7 3,421,669 + Shewana3_2862 0.28 -0.4 3,421,669 + Shewana3_2862 0.28 +0.6 3,421,669 + Shewana3_2862 0.28 +0.6 3,421,677 - Shewana3_2862 0.28 +0.9 3,421,677 - Shewana3_2862 0.28 -1.9 3,421,856 - Shewana3_2862 0.36 +0.3 3,421,868 - Shewana3_2862 0.37 +0.1
Or see this region's nucleotide sequence