Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2858 and Shewana3_2859 are separated by 70 nucleotides Shewana3_2859 and Shewana3_2860 are separated by 109 nucleotides
Shewana3_2858: Shewana3_2858 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 3,417,292 to 3,418,305
_2858
Shewana3_2859: Shewana3_2859 - MarR family transcriptional regulator (RefSeq), at 3,418,376 to 3,418,969
_2859
Shewana3_2860: Shewana3_2860 - major facilitator transporter (RefSeq), at 3,419,079 to 3,420,275
_2860
Position (kb)
3418
3419 Strain fitness (log2 ratio)
-1
0
1 at 3417.769 kb on - strand, within Shewana3_2858 at 3417.945 kb on + strand, within Shewana3_2858 at 3418.163 kb on + strand, within Shewana3_2858 at 3418.219 kb on - strand at 3418.484 kb on - strand, within Shewana3_2859 at 3418.704 kb on - strand, within Shewana3_2859 at 3418.841 kb on + strand, within Shewana3_2859 at 3419.035 kb on - strand at 3419.064 kb on + strand at 3419.064 kb on + strand at 3419.064 kb on + strand at 3419.072 kb on - strand at 3419.072 kb on - strand at 3419.072 kb on - strand at 3419.072 kb on - strand at 3419.143 kb on + strand at 3419.143 kb on + strand at 3419.143 kb on + strand at 3419.151 kb on - strand at 3419.151 kb on - strand at 3419.151 kb on - strand at 3419.235 kb on - strand, within Shewana3_2860 at 3419.239 kb on + strand, within Shewana3_2860 at 3419.298 kb on + strand, within Shewana3_2860 at 3419.390 kb on + strand, within Shewana3_2860 at 3419.393 kb on - strand, within Shewana3_2860 at 3419.403 kb on - strand, within Shewana3_2860 at 3419.403 kb on - strand, within Shewana3_2860 at 3419.411 kb on - strand, within Shewana3_2860 at 3419.427 kb on - strand, within Shewana3_2860 at 3419.429 kb on + strand, within Shewana3_2860 at 3419.437 kb on - strand, within Shewana3_2860 at 3419.437 kb on - strand, within Shewana3_2860 at 3419.502 kb on - strand, within Shewana3_2860 at 3419.580 kb on + strand, within Shewana3_2860 at 3419.607 kb on - strand, within Shewana3_2860 at 3419.775 kb on - strand, within Shewana3_2860 at 3419.775 kb on - strand, within Shewana3_2860 at 3419.814 kb on + strand, within Shewana3_2860 at 3419.814 kb on + strand, within Shewana3_2860 at 3419.822 kb on - strand, within Shewana3_2860 at 3419.829 kb on - strand, within Shewana3_2860
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 3,417,769 - Shewana3_2858 0.47 +0.3 3,417,945 + Shewana3_2858 0.64 -1.3 3,418,163 + Shewana3_2858 0.86 -0.3 3,418,219 - +0.9 3,418,484 - Shewana3_2859 0.18 +0.4 3,418,704 - Shewana3_2859 0.55 +0.5 3,418,841 + Shewana3_2859 0.78 +0.7 3,419,035 - +0.4 3,419,064 + -0.4 3,419,064 + +0.0 3,419,064 + -0.6 3,419,072 - +0.8 3,419,072 - -0.4 3,419,072 - +0.4 3,419,072 - -0.9 3,419,143 + +0.1 3,419,143 + -0.6 3,419,143 + +0.3 3,419,151 - -1.1 3,419,151 - -0.5 3,419,151 - -0.3 3,419,235 - Shewana3_2860 0.13 -0.1 3,419,239 + Shewana3_2860 0.13 -0.3 3,419,298 + Shewana3_2860 0.18 -0.1 3,419,390 + Shewana3_2860 0.26 -0.3 3,419,393 - Shewana3_2860 0.26 -0.1 3,419,403 - Shewana3_2860 0.27 +0.5 3,419,403 - Shewana3_2860 0.27 -1.1 3,419,411 - Shewana3_2860 0.28 +0.1 3,419,427 - Shewana3_2860 0.29 -0.2 3,419,429 + Shewana3_2860 0.29 +0.7 3,419,437 - Shewana3_2860 0.30 -0.3 3,419,437 - Shewana3_2860 0.30 -0.3 3,419,502 - Shewana3_2860 0.35 -0.5 3,419,580 + Shewana3_2860 0.42 +0.6 3,419,607 - Shewana3_2860 0.44 +0.5 3,419,775 - Shewana3_2860 0.58 -0.7 3,419,775 - Shewana3_2860 0.58 +0.1 3,419,814 + Shewana3_2860 0.61 -0.5 3,419,814 + Shewana3_2860 0.61 +1.0 3,419,822 - Shewana3_2860 0.62 +0.0 3,419,829 - Shewana3_2860 0.63 -1.4
Or see this region's nucleotide sequence