Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2554

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2553 and Shewana3_2554 are separated by 94 nucleotidesShewana3_2554 and Shewana3_2555 are separated by 342 nucleotidesShewana3_2555 and Shewana3_2556 are separated by 116 nucleotides Shewana3_2553: Shewana3_2553 - aldose 1-epimerase (RefSeq), at 3,055,236 to 3,056,084 _2553 Shewana3_2554: Shewana3_2554 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 3,056,179 to 3,057,054 _2554 Shewana3_2555: Shewana3_2555 - thioesterase superfamily protein (RefSeq), at 3,057,397 to 3,057,876 _2555 Shewana3_2556: Shewana3_2556 - hypothetical protein (RefSeq), at 3,057,993 to 3,058,361 _2556 Position (kb) 3056 3057 3058Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3055.296 kb on + strandat 3055.444 kb on + strand, within Shewana3_2553at 3055.484 kb on - strand, within Shewana3_2553at 3055.518 kb on + strand, within Shewana3_2553at 3055.654 kb on + strand, within Shewana3_2553at 3055.685 kb on + strand, within Shewana3_2553at 3055.862 kb on - strand, within Shewana3_2553at 3055.915 kb on - strand, within Shewana3_2553at 3056.500 kb on + strand, within Shewana3_2554at 3056.500 kb on + strand, within Shewana3_2554at 3056.508 kb on - strand, within Shewana3_2554at 3056.558 kb on - strand, within Shewana3_2554at 3056.613 kb on - strand, within Shewana3_2554at 3056.938 kb on + strand, within Shewana3_2554at 3056.941 kb on - strand, within Shewana3_2554at 3056.962 kb on + strand, within Shewana3_2554at 3056.962 kb on + strand, within Shewana3_2554at 3056.970 kb on - strandat 3056.984 kb on - strandat 3056.984 kb on - strandat 3057.107 kb on + strandat 3057.146 kb on + strandat 3057.161 kb on - strandat 3057.248 kb on + strandat 3057.371 kb on - strandat 3057.474 kb on + strand, within Shewana3_2555at 3057.540 kb on + strand, within Shewana3_2555at 3057.617 kb on - strand, within Shewana3_2555at 3057.701 kb on - strand, within Shewana3_2555

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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3,055,296 + +0.5
3,055,444 + Shewana3_2553 0.24 -0.7
3,055,484 - Shewana3_2553 0.29 +1.8
3,055,518 + Shewana3_2553 0.33 -1.2
3,055,654 + Shewana3_2553 0.49 +2.8
3,055,685 + Shewana3_2553 0.53 -1.6
3,055,862 - Shewana3_2553 0.74 -0.2
3,055,915 - Shewana3_2553 0.80 +0.2
3,056,500 + Shewana3_2554 0.37 +0.2
3,056,500 + Shewana3_2554 0.37 +0.2
3,056,508 - Shewana3_2554 0.38 +0.8
3,056,558 - Shewana3_2554 0.43 +0.2
3,056,613 - Shewana3_2554 0.50 -0.3
3,056,938 + Shewana3_2554 0.87 -0.8
3,056,941 - Shewana3_2554 0.87 -0.4
3,056,962 + Shewana3_2554 0.89 -0.2
3,056,962 + Shewana3_2554 0.89 +0.4
3,056,970 - +0.8
3,056,984 - +0.2
3,056,984 - +0.1
3,057,107 + -0.0
3,057,146 + +1.8
3,057,161 - -1.8
3,057,248 + -1.0
3,057,371 - +1.0
3,057,474 + Shewana3_2555 0.16 -0.2
3,057,540 + Shewana3_2555 0.30 +0.8
3,057,617 - Shewana3_2555 0.46 +1.3
3,057,701 - Shewana3_2555 0.63 +0.8

Or see this region's nucleotide sequence