Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2551 and Shewana3_2552 are separated by 294 nucleotides Shewana3_2552 and Shewana3_2553 are separated by 227 nucleotides
Shewana3_2551: Shewana3_2551 - TonB-dependent siderophore receptor (RefSeq), at 3,050,707 to 3,052,923
_2551
Shewana3_2552: Shewana3_2552 - acyl-CoA dehydrogenase domain-containing protein (RefSeq), at 3,053,218 to 3,055,008
_2552
Shewana3_2553: Shewana3_2553 - aldose 1-epimerase (RefSeq), at 3,055,236 to 3,056,084
_2553
Position (kb)
3053
3054
3055
3056 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3052.267 kb on - strand, within Shewana3_2551 at 3052.448 kb on + strand, within Shewana3_2551 at 3053.287 kb on + strand at 3053.295 kb on - strand at 3053.305 kb on - strand at 3053.415 kb on - strand, within Shewana3_2552 at 3053.891 kb on + strand, within Shewana3_2552 at 3054.048 kb on - strand, within Shewana3_2552 at 3054.067 kb on - strand, within Shewana3_2552 at 3054.096 kb on + strand, within Shewana3_2552 at 3054.096 kb on + strand, within Shewana3_2552 at 3054.184 kb on + strand, within Shewana3_2552 at 3054.261 kb on + strand, within Shewana3_2552 at 3054.352 kb on - strand, within Shewana3_2552 at 3054.600 kb on - strand, within Shewana3_2552 at 3054.626 kb on - strand, within Shewana3_2552 at 3054.707 kb on - strand, within Shewana3_2552 at 3054.708 kb on - strand, within Shewana3_2552 at 3054.727 kb on + strand, within Shewana3_2552 at 3054.825 kb on - strand, within Shewana3_2552 at 3054.846 kb on - strand at 3054.893 kb on - strand at 3055.056 kb on - strand at 3055.296 kb on + strand at 3055.444 kb on + strand, within Shewana3_2553 at 3055.484 kb on - strand, within Shewana3_2553 at 3055.518 kb on + strand, within Shewana3_2553 at 3055.654 kb on + strand, within Shewana3_2553 at 3055.685 kb on + strand, within Shewana3_2553 at 3055.862 kb on - strand, within Shewana3_2553 at 3055.915 kb on - strand, within Shewana3_2553
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 3,052,267 - Shewana3_2551 0.70 -0.2 3,052,448 + Shewana3_2551 0.79 -0.2 3,053,287 + +1.5 3,053,295 - +0.7 3,053,305 - +0.4 3,053,415 - Shewana3_2552 0.11 -0.2 3,053,891 + Shewana3_2552 0.38 -1.4 3,054,048 - Shewana3_2552 0.46 -1.0 3,054,067 - Shewana3_2552 0.47 -1.4 3,054,096 + Shewana3_2552 0.49 +0.5 3,054,096 + Shewana3_2552 0.49 +0.9 3,054,184 + Shewana3_2552 0.54 -0.0 3,054,261 + Shewana3_2552 0.58 +1.8 3,054,352 - Shewana3_2552 0.63 -0.0 3,054,600 - Shewana3_2552 0.77 +1.3 3,054,626 - Shewana3_2552 0.79 +0.2 3,054,707 - Shewana3_2552 0.83 -1.6 3,054,708 - Shewana3_2552 0.83 +0.6 3,054,727 + Shewana3_2552 0.84 -1.0 3,054,825 - Shewana3_2552 0.90 +0.4 3,054,846 - +1.0 3,054,893 - -0.2 3,055,056 - +0.2 3,055,296 + +0.5 3,055,444 + Shewana3_2553 0.24 -0.7 3,055,484 - Shewana3_2553 0.29 +1.8 3,055,518 + Shewana3_2553 0.33 -1.2 3,055,654 + Shewana3_2553 0.49 +2.8 3,055,685 + Shewana3_2553 0.53 -1.6 3,055,862 - Shewana3_2553 0.74 -0.2 3,055,915 - Shewana3_2553 0.80 +0.2
Or see this region's nucleotide sequence