Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2521 and Shewana3_2522 are separated by 60 nucleotides Shewana3_2522 and Shewana3_2523 are separated by 175 nucleotides
Shewana3_2521: Shewana3_2521 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,014,080 to 3,015,681
_2521
Shewana3_2522: Shewana3_2522 - multi-sensor hybrid histidine kinase (RefSeq), at 3,015,742 to 3,019,182
_2522
Shewana3_2523: Shewana3_2523 - acetyl-CoA synthetase (RefSeq), at 3,019,358 to 3,021,310
_2523
Position (kb)
3015
3016
3017
3018
3019
3020 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3014.759 kb on - strand, within Shewana3_2521 at 3015.000 kb on + strand, within Shewana3_2521 at 3015.194 kb on - strand, within Shewana3_2521 at 3015.721 kb on + strand at 3015.752 kb on + strand at 3015.829 kb on - strand at 3015.849 kb on + strand at 3016.069 kb on - strand at 3016.153 kb on - strand, within Shewana3_2522 at 3016.216 kb on - strand, within Shewana3_2522 at 3016.223 kb on - strand, within Shewana3_2522 at 3016.225 kb on + strand, within Shewana3_2522 at 3016.276 kb on + strand, within Shewana3_2522 at 3016.289 kb on - strand, within Shewana3_2522 at 3016.324 kb on + strand, within Shewana3_2522 at 3016.380 kb on - strand, within Shewana3_2522 at 3016.574 kb on - strand, within Shewana3_2522 at 3016.586 kb on + strand, within Shewana3_2522 at 3016.594 kb on - strand, within Shewana3_2522 at 3016.719 kb on - strand, within Shewana3_2522 at 3016.719 kb on - strand, within Shewana3_2522 at 3017.061 kb on + strand, within Shewana3_2522 at 3017.187 kb on - strand, within Shewana3_2522 at 3017.477 kb on - strand, within Shewana3_2522 at 3017.732 kb on + strand, within Shewana3_2522 at 3017.798 kb on - strand, within Shewana3_2522 at 3017.927 kb on + strand, within Shewana3_2522 at 3018.149 kb on - strand, within Shewana3_2522 at 3018.240 kb on - strand, within Shewana3_2522 at 3018.383 kb on - strand, within Shewana3_2522 at 3018.397 kb on - strand, within Shewana3_2522 at 3018.407 kb on + strand, within Shewana3_2522 at 3018.446 kb on + strand, within Shewana3_2522 at 3018.469 kb on + strand, within Shewana3_2522 at 3018.796 kb on + strand, within Shewana3_2522 at 3018.822 kb on + strand, within Shewana3_2522 at 3018.850 kb on - strand at 3018.944 kb on - strand at 3019.117 kb on + strand at 3019.507 kb on + strand at 3019.886 kb on - strand, within Shewana3_2523 at 3020.167 kb on + strand, within Shewana3_2523 at 3020.167 kb on + strand, within Shewana3_2523
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 3,014,759 - Shewana3_2521 0.42 +0.2 3,015,000 + Shewana3_2521 0.57 +1.1 3,015,194 - Shewana3_2521 0.70 +1.8 3,015,721 + +0.3 3,015,752 + +0.6 3,015,829 - +0.0 3,015,849 + -0.2 3,016,069 - -0.4 3,016,153 - Shewana3_2522 0.12 +0.8 3,016,216 - Shewana3_2522 0.14 +0.6 3,016,223 - Shewana3_2522 0.14 +0.2 3,016,225 + Shewana3_2522 0.14 +0.8 3,016,276 + Shewana3_2522 0.16 -0.8 3,016,289 - Shewana3_2522 0.16 -0.8 3,016,324 + Shewana3_2522 0.17 +0.8 3,016,380 - Shewana3_2522 0.19 +0.4 3,016,574 - Shewana3_2522 0.24 -0.9 3,016,586 + Shewana3_2522 0.25 +0.2 3,016,594 - Shewana3_2522 0.25 +0.4 3,016,719 - Shewana3_2522 0.28 -0.6 3,016,719 - Shewana3_2522 0.28 -0.0 3,017,061 + Shewana3_2522 0.38 +0.8 3,017,187 - Shewana3_2522 0.42 -0.4 3,017,477 - Shewana3_2522 0.50 -0.2 3,017,732 + Shewana3_2522 0.58 -2.4 3,017,798 - Shewana3_2522 0.60 +0.4 3,017,927 + Shewana3_2522 0.63 +0.3 3,018,149 - Shewana3_2522 0.70 +0.9 3,018,240 - Shewana3_2522 0.73 +0.8 3,018,383 - Shewana3_2522 0.77 +1.8 3,018,397 - Shewana3_2522 0.77 +1.2 3,018,407 + Shewana3_2522 0.77 +0.8 3,018,446 + Shewana3_2522 0.79 +0.8 3,018,469 + Shewana3_2522 0.79 -0.6 3,018,796 + Shewana3_2522 0.89 +0.2 3,018,822 + Shewana3_2522 0.90 +0.2 3,018,850 - -0.1 3,018,944 - -0.4 3,019,117 + -0.6 3,019,507 + -1.3 3,019,886 - Shewana3_2523 0.27 +1.0 3,020,167 + Shewana3_2523 0.41 +0.9 3,020,167 + Shewana3_2523 0.41 -0.5
Or see this region's nucleotide sequence