Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2515

Experiment: 2-Furfuraldehyde 0.125 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmdoG and Shewana3_2515 are separated by 700 nucleotidesShewana3_2515 and bioD are separated by 80 nucleotidesbioD and Shewana3_2517 are separated by 55 nucleotides Shewana3_2514: mdoG - glucan biosynthesis protein G (RefSeq), at 3,004,504 to 3,006,084 mdoG Shewana3_2515: Shewana3_2515 - hypothetical protein (RefSeq), at 3,006,785 to 3,007,753 _2515 Shewana3_2516: bioD - dithiobiotin synthetase (RefSeq), at 3,007,834 to 3,008,529 bioD Shewana3_2517: Shewana3_2517 - biotin biosynthesis protein BioC (RefSeq), at 3,008,585 to 3,009,412 _2517 Position (kb) 3006 3007 3008Strain fitness (log2 ratio) -2 -1 0 1 2at 3006.034 kb on - strandat 3006.097 kb on + strandat 3006.110 kb on - strandat 3006.151 kb on + strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.159 kb on - strandat 3006.208 kb on + strandat 3006.216 kb on - strandat 3006.216 kb on - strandat 3006.267 kb on - strandat 3006.352 kb on + strandat 3006.352 kb on + strandat 3006.382 kb on - strandat 3006.405 kb on - strandat 3006.519 kb on + strandat 3006.622 kb on + strandat 3006.896 kb on - strand, within Shewana3_2515at 3006.906 kb on + strand, within Shewana3_2515at 3006.918 kb on + strand, within Shewana3_2515at 3006.931 kb on + strand, within Shewana3_2515at 3007.045 kb on + strand, within Shewana3_2515at 3007.052 kb on - strand, within Shewana3_2515at 3007.238 kb on - strand, within Shewana3_2515at 3007.313 kb on + strand, within Shewana3_2515at 3007.319 kb on + strand, within Shewana3_2515at 3007.332 kb on - strand, within Shewana3_2515at 3007.458 kb on + strand, within Shewana3_2515at 3007.458 kb on + strand, within Shewana3_2515at 3007.458 kb on + strand, within Shewana3_2515at 3007.458 kb on + strand, within Shewana3_2515at 3007.466 kb on - strand, within Shewana3_2515at 3007.466 kb on - strand, within Shewana3_2515at 3007.466 kb on - strand, within Shewana3_2515at 3007.466 kb on - strand, within Shewana3_2515at 3007.468 kb on + strand, within Shewana3_2515at 3007.468 kb on + strand, within Shewana3_2515at 3007.476 kb on - strand, within Shewana3_2515at 3007.480 kb on + strand, within Shewana3_2515

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
remove
3,006,034 - +0.8
3,006,097 + +0.0
3,006,110 - +0.8
3,006,151 + +0.8
3,006,159 - -0.1
3,006,159 - +0.6
3,006,159 - -0.2
3,006,159 - +0.1
3,006,159 - +0.4
3,006,159 - -0.2
3,006,208 + +1.8
3,006,216 - +0.7
3,006,216 - -0.1
3,006,267 - +0.3
3,006,352 + +0.8
3,006,352 + +0.8
3,006,382 - +1.8
3,006,405 - +1.8
3,006,519 + -2.5
3,006,622 + +0.0
3,006,896 - Shewana3_2515 0.11 +0.8
3,006,906 + Shewana3_2515 0.12 -0.4
3,006,918 + Shewana3_2515 0.14 -0.7
3,006,931 + Shewana3_2515 0.15 -0.5
3,007,045 + Shewana3_2515 0.27 -0.5
3,007,052 - Shewana3_2515 0.28 +1.8
3,007,238 - Shewana3_2515 0.47 +1.8
3,007,313 + Shewana3_2515 0.54 +0.4
3,007,319 + Shewana3_2515 0.55 +0.6
3,007,332 - Shewana3_2515 0.56 +1.8
3,007,458 + Shewana3_2515 0.69 +1.3
3,007,458 + Shewana3_2515 0.69 +0.5
3,007,458 + Shewana3_2515 0.69 +0.6
3,007,458 + Shewana3_2515 0.69 -0.4
3,007,466 - Shewana3_2515 0.70 +0.8
3,007,466 - Shewana3_2515 0.70 +0.2
3,007,466 - Shewana3_2515 0.70 +0.2
3,007,466 - Shewana3_2515 0.70 +0.8
3,007,468 + Shewana3_2515 0.70 +0.6
3,007,468 + Shewana3_2515 0.70 -0.2
3,007,476 - Shewana3_2515 0.71 +0.8
3,007,480 + Shewana3_2515 0.72 +1.4

Or see this region's nucleotide sequence