Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2429 and Shewana3_2430 are separated by 100 nucleotides Shewana3_2430 and Shewana3_2431 are separated by 157 nucleotides
Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424
_2429
Shewana3_2430: Shewana3_2430 - LysR family transcriptional regulator (RefSeq), at 2,913,525 to 2,914,391
_2430
Shewana3_2431: Shewana3_2431 - diguanylate cyclase (RefSeq), at 2,914,549 to 2,915,538
_2431
Position (kb)
2913
2914
2915 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2912.698 kb on + strand, within Shewana3_2429 at 2912.700 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.766 kb on - strand, within Shewana3_2429 at 2912.942 kb on - strand, within Shewana3_2429 at 2913.018 kb on - strand, within Shewana3_2429 at 2913.176 kb on + strand, within Shewana3_2429 at 2913.208 kb on + strand, within Shewana3_2429 at 2913.732 kb on + strand, within Shewana3_2430 at 2913.828 kb on - strand, within Shewana3_2430 at 2913.862 kb on - strand, within Shewana3_2430 at 2913.958 kb on + strand, within Shewana3_2430 at 2914.136 kb on - strand, within Shewana3_2430 at 2914.184 kb on - strand, within Shewana3_2430 at 2914.266 kb on + strand, within Shewana3_2430 at 2914.789 kb on + strand, within Shewana3_2431 at 2914.797 kb on - strand, within Shewana3_2431 at 2914.850 kb on + strand, within Shewana3_2431 at 2915.028 kb on - strand, within Shewana3_2431 at 2915.129 kb on - strand, within Shewana3_2431 at 2915.369 kb on - strand, within Shewana3_2431
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,912,698 + Shewana3_2429 0.35 +1.8 2,912,700 - Shewana3_2429 0.35 +1.1 2,912,706 - Shewana3_2429 0.35 +0.5 2,912,706 - Shewana3_2429 0.35 -0.2 2,912,766 - Shewana3_2429 0.41 -1.2 2,912,942 - Shewana3_2429 0.57 +0.6 2,913,018 - Shewana3_2429 0.63 +0.3 2,913,176 + Shewana3_2429 0.78 -0.5 2,913,208 + Shewana3_2429 0.81 +0.4 2,913,732 + Shewana3_2430 0.24 -0.2 2,913,828 - Shewana3_2430 0.35 +0.2 2,913,862 - Shewana3_2430 0.39 -1.5 2,913,958 + Shewana3_2430 0.50 -1.5 2,914,136 - Shewana3_2430 0.70 -0.2 2,914,184 - Shewana3_2430 0.76 -0.2 2,914,266 + Shewana3_2430 0.85 -0.5 2,914,789 + Shewana3_2431 0.24 -0.5 2,914,797 - Shewana3_2431 0.25 -0.2 2,914,850 + Shewana3_2431 0.30 +0.8 2,915,028 - Shewana3_2431 0.48 +0.2 2,915,129 - Shewana3_2431 0.59 -1.9 2,915,369 - Shewana3_2431 0.83 +1.2
Or see this region's nucleotide sequence