Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2406 and Shewana3_2407 are separated by 60 nucleotides Shewana3_2407 and Shewana3_2408 are separated by 160 nucleotides
Shewana3_2406: Shewana3_2406 - hypothetical protein (RefSeq), at 2,884,077 to 2,885,000
_2406
Shewana3_2407: Shewana3_2407 - peptidase M28 (RefSeq), at 2,885,061 to 2,886,686
_2407
Shewana3_2408: Shewana3_2408 - diguanylate cyclase (RefSeq), at 2,886,847 to 2,887,872
_2408
Position (kb)
2885
2886
2887 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2884.183 kb on + strand, within Shewana3_2406 at 2884.254 kb on - strand, within Shewana3_2406 at 2884.367 kb on + strand, within Shewana3_2406 at 2884.474 kb on - strand at 2884.492 kb on - strand, within Shewana3_2406 at 2884.528 kb on - strand, within Shewana3_2406 at 2884.572 kb on - strand, within Shewana3_2406 at 2884.603 kb on + strand, within Shewana3_2406 at 2884.819 kb on + strand, within Shewana3_2406 at 2884.880 kb on - strand, within Shewana3_2406 at 2885.012 kb on + strand at 2885.084 kb on - strand at 2885.531 kb on + strand, within Shewana3_2407 at 2885.577 kb on - strand, within Shewana3_2407 at 2885.609 kb on - strand, within Shewana3_2407 at 2885.646 kb on + strand, within Shewana3_2407 at 2885.661 kb on - strand, within Shewana3_2407 at 2885.682 kb on - strand, within Shewana3_2407 at 2885.710 kb on + strand, within Shewana3_2407 at 2885.710 kb on + strand, within Shewana3_2407 at 2885.729 kb on - strand, within Shewana3_2407 at 2885.785 kb on + strand, within Shewana3_2407 at 2885.890 kb on - strand, within Shewana3_2407 at 2886.147 kb on - strand, within Shewana3_2407 at 2886.849 kb on - strand at 2886.899 kb on + strand at 2886.946 kb on - strand at 2886.956 kb on - strand, within Shewana3_2408 at 2886.993 kb on + strand, within Shewana3_2408 at 2887.014 kb on + strand, within Shewana3_2408 at 2887.014 kb on + strand, within Shewana3_2408 at 2887.022 kb on - strand, within Shewana3_2408 at 2887.404 kb on - strand, within Shewana3_2408 at 2887.406 kb on + strand, within Shewana3_2408 at 2887.505 kb on - strand, within Shewana3_2408 at 2887.597 kb on - strand, within Shewana3_2408 at 2887.670 kb on - strand, within Shewana3_2408
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,884,183 + Shewana3_2406 0.11 +0.8 2,884,254 - Shewana3_2406 0.19 -0.2 2,884,367 + Shewana3_2406 0.31 -1.8 2,884,474 - +0.8 2,884,492 - Shewana3_2406 0.45 +0.8 2,884,528 - Shewana3_2406 0.49 -1.4 2,884,572 - Shewana3_2406 0.54 -0.5 2,884,603 + Shewana3_2406 0.57 -1.9 2,884,819 + Shewana3_2406 0.80 +0.1 2,884,880 - Shewana3_2406 0.87 +0.6 2,885,012 + +0.6 2,885,084 - +0.7 2,885,531 + Shewana3_2407 0.29 -0.5 2,885,577 - Shewana3_2407 0.32 +0.5 2,885,609 - Shewana3_2407 0.34 -0.9 2,885,646 + Shewana3_2407 0.36 -1.4 2,885,661 - Shewana3_2407 0.37 -0.4 2,885,682 - Shewana3_2407 0.38 +0.9 2,885,710 + Shewana3_2407 0.40 +0.2 2,885,710 + Shewana3_2407 0.40 +1.8 2,885,729 - Shewana3_2407 0.41 +0.2 2,885,785 + Shewana3_2407 0.45 +0.2 2,885,890 - Shewana3_2407 0.51 -0.2 2,886,147 - Shewana3_2407 0.67 +0.5 2,886,849 - +2.1 2,886,899 + +0.7 2,886,946 - -0.5 2,886,956 - Shewana3_2408 0.11 +0.2 2,886,993 + Shewana3_2408 0.14 -0.1 2,887,014 + Shewana3_2408 0.16 -1.2 2,887,014 + Shewana3_2408 0.16 -1.5 2,887,022 - Shewana3_2408 0.17 +0.2 2,887,404 - Shewana3_2408 0.54 -1.8 2,887,406 + Shewana3_2408 0.54 +1.2 2,887,505 - Shewana3_2408 0.64 +1.2 2,887,597 - Shewana3_2408 0.73 -0.8 2,887,670 - Shewana3_2408 0.80 +0.0
Or see this region's nucleotide sequence