Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2176 and Shewana3_2177 are separated by 110 nucleotides Shewana3_2177 and Shewana3_2178 are separated by 9 nucleotides Shewana3_2178 and Shewana3_2179 are separated by 229 nucleotides
Shewana3_2176: Shewana3_2176 - hypothetical protein (RefSeq), at 2,608,848 to 2,610,494
_2176
Shewana3_2177: Shewana3_2177 - hypothetical protein (RefSeq), at 2,610,605 to 2,612,809
_2177
Shewana3_2178: Shewana3_2178 - hypothetical protein (RefSeq), at 2,612,819 to 2,613,241
_2178
Shewana3_2179: Shewana3_2179 - hypothetical protein (RefSeq), at 2,613,471 to 2,614,376
_2179
Position (kb)
2610
2611
2612
2613 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.667 kb on - strand, within Shewana3_2176 at 2609.700 kb on + strand, within Shewana3_2176 at 2610.021 kb on + strand, within Shewana3_2176 at 2610.134 kb on + strand, within Shewana3_2176 at 2610.142 kb on - strand, within Shewana3_2176 at 2610.298 kb on - strand, within Shewana3_2176 at 2610.578 kb on + strand at 2610.639 kb on - strand at 2610.719 kb on + strand at 2610.809 kb on + strand at 2612.266 kb on + strand, within Shewana3_2177 at 2612.406 kb on + strand, within Shewana3_2177 at 2612.539 kb on - strand, within Shewana3_2177 at 2612.760 kb on + strand at 2612.783 kb on + strand at 2612.804 kb on + strand at 2612.902 kb on - strand, within Shewana3_2178 at 2612.957 kb on + strand, within Shewana3_2178 at 2612.957 kb on + strand, within Shewana3_2178 at 2613.005 kb on + strand, within Shewana3_2178 at 2613.084 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.106 kb on + strand, within Shewana3_2178 at 2613.114 kb on - strand, within Shewana3_2178 at 2613.221 kb on + strand at 2613.226 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.385 kb on + strand at 2613.419 kb on - strand at 2613.438 kb on + strand at 2613.462 kb on - strand at 2613.462 kb on - strand at 2613.462 kb on - strand at 2613.464 kb on - strand at 2613.574 kb on - strand, within Shewana3_2179 at 2613.795 kb on - strand, within Shewana3_2179 at 2613.800 kb on - strand, within Shewana3_2179
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,609,667 - Shewana3_2176 0.50 +1.1 2,609,667 - Shewana3_2176 0.50 +1.1 2,609,667 - Shewana3_2176 0.50 +2.1 2,609,700 + Shewana3_2176 0.52 +1.1 2,610,021 + Shewana3_2176 0.71 -0.4 2,610,134 + Shewana3_2176 0.78 +0.1 2,610,142 - Shewana3_2176 0.79 +2.1 2,610,298 - Shewana3_2176 0.88 +0.1 2,610,578 + +2.1 2,610,639 - +0.1 2,610,719 + +2.0 2,610,809 + +2.0 2,612,266 + Shewana3_2177 0.75 +0.7 2,612,406 + Shewana3_2177 0.82 +1.1 2,612,539 - Shewana3_2177 0.88 +1.1 2,612,760 + +2.1 2,612,783 + +1.1 2,612,804 + +0.5 2,612,902 - Shewana3_2178 0.20 +0.5 2,612,957 + Shewana3_2178 0.33 +1.1 2,612,957 + Shewana3_2178 0.33 +1.1 2,613,005 + Shewana3_2178 0.44 +0.5 2,613,084 + Shewana3_2178 0.63 +2.1 2,613,106 + Shewana3_2178 0.68 +1.1 2,613,106 + Shewana3_2178 0.68 -0.5 2,613,106 + Shewana3_2178 0.68 +1.1 2,613,106 + Shewana3_2178 0.68 +0.5 2,613,114 - Shewana3_2178 0.70 -0.7 2,613,221 + +1.1 2,613,226 + +1.1 2,613,385 + -2.2 2,613,385 + +1.3 2,613,385 + -1.3 2,613,385 + +0.8 2,613,385 + +0.1 2,613,419 - +0.1 2,613,438 + +1.1 2,613,462 - +2.1 2,613,462 - +1.1 2,613,462 - +2.1 2,613,464 - +1.1 2,613,574 - Shewana3_2179 0.11 +2.0 2,613,795 - Shewana3_2179 0.36 -0.3 2,613,800 - Shewana3_2179 0.36 -0.0
Or see this region's nucleotide sequence