Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2169

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2167 and Shewana3_2168 are separated by 125 nucleotidesShewana3_2168 and Shewana3_2169 are separated by 0 nucleotidesShewana3_2169 and Shewana3_2170 are separated by 3 nucleotides Shewana3_2167: Shewana3_2167 - diguanylate cyclase/phosphodiesterase (RefSeq), at 2,598,640 to 2,600,544 _2167 Shewana3_2168: Shewana3_2168 - Na(+)-translocating NADH-quinone reductase subunit E (RefSeq), at 2,600,670 to 2,601,248 _2168 Shewana3_2169: Shewana3_2169 - electron transport complex protein RnfB (RefSeq), at 2,601,249 to 2,601,830 _2169 Shewana3_2170: Shewana3_2170 - electron transport complex protein RnfC (RefSeq), at 2,601,834 to 2,604,200 _2170 Position (kb) 2601 2602Strain fitness (log2 ratio) -1 0 1 2at 2600.258 kb on - strand, within Shewana3_2167at 2600.275 kb on + strand, within Shewana3_2167at 2600.334 kb on + strand, within Shewana3_2167at 2600.361 kb on - strandat 2600.511 kb on + strandat 2600.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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2,600,258 - Shewana3_2167 0.85 -0.7
2,600,275 + Shewana3_2167 0.86 +0.8
2,600,334 + Shewana3_2167 0.89 +1.0
2,600,361 - +2.1
2,600,511 + -1.2
2,600,563 - +1.1

Or see this region's nucleotide sequence