Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2123 and Shewana3_2124 are separated by 212 nucleotides Shewana3_2124 and Shewana3_2125 are separated by 125 nucleotides Shewana3_2125 and Shewana3_2126 are separated by 110 nucleotides
Shewana3_2123: Shewana3_2123 - hypothetical protein (RefSeq), at 2,548,330 to 2,549,217
_2123
Shewana3_2124: Shewana3_2124 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,549,430 to 2,550,440
_2124
Shewana3_2125: Shewana3_2125 - superoxide dismutase, copper/zinc binding (RefSeq), at 2,550,566 to 2,551,078
_2125
Shewana3_2126: Shewana3_2126 - integrase catalytic subunit (RefSeq), at 2,551,189 to 2,551,911
_2126
Position (kb) 2549
2550
2551 Strain fitness (log2 ratio) -1
0
1
2 at 2548.790 kb on + strand, within Shewana3_2123 at 2548.939 kb on - strand, within Shewana3_2123 at 2549.080 kb on + strand, within Shewana3_2123 at 2549.080 kb on + strand, within Shewana3_2123 at 2549.238 kb on + strand at 2550.904 kb on + strand, within Shewana3_2125 at 2551.029 kb on - strand at 2551.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,548,790 + Shewana3_2123 0.52 +1.1 2,548,939 - Shewana3_2123 0.69 +0.9 2,549,080 + Shewana3_2123 0.84 +1.1 2,549,080 + Shewana3_2123 0.84 +0.2 2,549,238 + +1.4 2,550,904 + Shewana3_2125 0.66 +2.1 2,551,029 - +2.1 2,551,145 - +0.9
Or see this region's nucleotide sequence