Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2123

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2122 and Shewana3_2123 are separated by 206 nucleotidesShewana3_2123 and Shewana3_2124 are separated by 212 nucleotides Shewana3_2122: Shewana3_2122 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,546,690 to 2,548,123 _2122 Shewana3_2123: Shewana3_2123 - hypothetical protein (RefSeq), at 2,548,330 to 2,549,217 _2123 Shewana3_2124: Shewana3_2124 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,549,430 to 2,550,440 _2124 Position (kb) 2548 2549 2550Strain fitness (log2 ratio) -1 0 1 2at 2547.684 kb on - strand, within Shewana3_2122at 2547.801 kb on - strand, within Shewana3_2122at 2548.370 kb on + strandat 2548.790 kb on + strand, within Shewana3_2123at 2548.939 kb on - strand, within Shewana3_2123at 2549.080 kb on + strand, within Shewana3_2123at 2549.080 kb on + strand, within Shewana3_2123at 2549.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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2,547,684 - Shewana3_2122 0.69 -0.5
2,547,801 - Shewana3_2122 0.77 -0.2
2,548,370 + +2.1
2,548,790 + Shewana3_2123 0.52 +1.1
2,548,939 - Shewana3_2123 0.69 +0.9
2,549,080 + Shewana3_2123 0.84 +1.1
2,549,080 + Shewana3_2123 0.84 +0.2
2,549,238 + +1.4

Or see this region's nucleotide sequence