Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2089 and Shewana3_2090 are separated by 2 nucleotides Shewana3_2090 and Shewana3_2091 overlap by 4 nucleotides Shewana3_2091 and Shewana3_2092 are separated by 2 nucleotides
Shewana3_2089: Shewana3_2089 - formate dehydrogenase alpha subunit (RefSeq), at 2,506,781 to 2,509,798
_2089
Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703
_2090
Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323
_2091
Shewana3_2092: Shewana3_2092 - formate dehydrogenase accessory protein FdhE (RefSeq), at 2,511,326 to 2,512,225
_2092
Position (kb)
2509
2510
2511 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2508.895 kb on + strand, within Shewana3_2089 at 2509.119 kb on + strand, within Shewana3_2089 at 2509.142 kb on - strand, within Shewana3_2089 at 2509.166 kb on - strand, within Shewana3_2089 at 2509.297 kb on + strand, within Shewana3_2089 at 2509.329 kb on + strand, within Shewana3_2089 at 2509.563 kb on + strand at 2509.599 kb on - strand at 2509.722 kb on - strand at 2510.103 kb on - strand, within Shewana3_2090 at 2510.108 kb on - strand, within Shewana3_2090 at 2510.128 kb on - strand, within Shewana3_2090 at 2510.132 kb on + strand, within Shewana3_2090 at 2510.426 kb on + strand, within Shewana3_2090 at 2510.569 kb on + strand, within Shewana3_2090 at 2510.820 kb on - strand, within Shewana3_2091 at 2510.984 kb on - strand, within Shewana3_2091 at 2511.078 kb on + strand, within Shewana3_2091 at 2511.115 kb on - strand, within Shewana3_2091 at 2511.154 kb on + strand, within Shewana3_2091 at 2511.209 kb on - strand, within Shewana3_2091 at 2511.269 kb on + strand at 2511.604 kb on - strand, within Shewana3_2092 at 2511.671 kb on + strand, within Shewana3_2092 at 2511.681 kb on + strand, within Shewana3_2092 at 2511.691 kb on + strand, within Shewana3_2092
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,508,895 + Shewana3_2089 0.70 +0.1 2,509,119 + Shewana3_2089 0.77 -0.1 2,509,142 - Shewana3_2089 0.78 +0.1 2,509,166 - Shewana3_2089 0.79 -0.2 2,509,297 + Shewana3_2089 0.83 -0.7 2,509,329 + Shewana3_2089 0.84 +2.1 2,509,563 + +0.5 2,509,599 - +2.5 2,509,722 - -1.1 2,510,103 - Shewana3_2090 0.33 +3.1 2,510,108 - Shewana3_2090 0.34 +1.1 2,510,128 - Shewana3_2090 0.36 +1.1 2,510,132 + Shewana3_2090 0.37 +0.1 2,510,426 + Shewana3_2090 0.69 +1.2 2,510,569 + Shewana3_2090 0.85 -1.5 2,510,820 - Shewana3_2091 0.19 -0.5 2,510,984 - Shewana3_2091 0.46 +1.1 2,511,078 + Shewana3_2091 0.61 +0.2 2,511,115 - Shewana3_2091 0.67 +1.1 2,511,154 + Shewana3_2091 0.73 -0.1 2,511,209 - Shewana3_2091 0.82 +0.1 2,511,269 + -0.9 2,511,604 - Shewana3_2092 0.31 +0.2 2,511,671 + Shewana3_2092 0.38 +0.1 2,511,681 + Shewana3_2092 0.39 +0.2 2,511,691 + Shewana3_2092 0.41 -0.2
Or see this region's nucleotide sequence