Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2057 and Shewana3_2058 overlap by 1 nucleotides Shewana3_2058 and Shewana3_2059 are separated by 14 nucleotides Shewana3_2059 and Shewana3_2060 are separated by 56 nucleotides Shewana3_2060 and Shewana3_2061 are separated by 259 nucleotides
Shewana3_2057: Shewana3_2057 - DsrH family protein (RefSeq), at 2,464,914 to 2,465,195
_2057
Shewana3_2058: Shewana3_2058 - DsrE family protein (RefSeq), at 2,465,195 to 2,465,551
_2058
Shewana3_2059: Shewana3_2059 - DsrE family protein (RefSeq), at 2,465,566 to 2,465,958
_2059
Shewana3_2060: Shewana3_2060 - hypothetical protein (RefSeq), at 2,466,015 to 2,466,674
_2060
Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845
_2061
Position (kb)
2466
2467 Strain fitness (log2 ratio)
-1
0
1 at 2466.070 kb on - strand at 2466.802 kb on - strand at 2466.890 kb on - strand at 2466.915 kb on - strand at 2467.140 kb on + strand, within Shewana3_2061 at 2467.411 kb on + strand, within Shewana3_2061 at 2467.555 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061 at 2467.668 kb on - strand, within Shewana3_2061
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,466,070 - -1.1 2,466,802 - +0.5 2,466,890 - +0.5 2,466,915 - +0.1 2,467,140 + Shewana3_2061 0.23 +0.5 2,467,411 + Shewana3_2061 0.52 +0.5 2,467,555 - Shewana3_2061 0.68 -0.2 2,467,668 - Shewana3_2061 0.80 +1.6 2,467,668 - Shewana3_2061 0.80 +0.8
Or see this region's nucleotide sequence