Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1950 and Shewana3_1951 overlap by 4 nucleotides Shewana3_1951 and Shewana3_1952 are separated by 121 nucleotides
Shewana3_1950: Shewana3_1950 - putative methyltransferase (RefSeq), at 2,319,245 to 2,320,237
_1950
Shewana3_1951: Shewana3_1951 - putative methyltransferase (RefSeq), at 2,320,234 to 2,320,992
_1951
Shewana3_1952: Shewana3_1952 - diguanylate cyclase (RefSeq), at 2,321,114 to 2,323,927
_1952
Position (kb)
2320
2321 Strain fitness (log2 ratio)
-1
0
1
2 at 2319.257 kb on - strand at 2319.314 kb on - strand at 2319.399 kb on - strand, within Shewana3_1950 at 2319.433 kb on - strand, within Shewana3_1950 at 2319.448 kb on + strand, within Shewana3_1950 at 2319.456 kb on - strand, within Shewana3_1950 at 2319.571 kb on - strand, within Shewana3_1950 at 2319.584 kb on - strand, within Shewana3_1950 at 2319.686 kb on + strand, within Shewana3_1950 at 2319.811 kb on + strand, within Shewana3_1950 at 2319.887 kb on - strand, within Shewana3_1950 at 2319.887 kb on - strand, within Shewana3_1950 at 2320.041 kb on - strand, within Shewana3_1950 at 2320.083 kb on + strand, within Shewana3_1950 at 2320.297 kb on + strand at 2320.334 kb on - strand, within Shewana3_1951 at 2320.406 kb on + strand, within Shewana3_1951 at 2320.505 kb on - strand, within Shewana3_1951 at 2320.540 kb on - strand, within Shewana3_1951 at 2320.568 kb on - strand, within Shewana3_1951 at 2320.857 kb on - strand, within Shewana3_1951 at 2321.181 kb on + strand at 2321.193 kb on - strand at 2321.268 kb on - strand at 2321.323 kb on - strand at 2321.409 kb on + strand, within Shewana3_1952 at 2321.437 kb on + strand, within Shewana3_1952 at 2321.460 kb on + strand, within Shewana3_1952 at 2321.761 kb on + strand, within Shewana3_1952 at 2321.790 kb on + strand, within Shewana3_1952 at 2321.795 kb on + strand, within Shewana3_1952
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,319,257 - +0.4 2,319,314 - -1.2 2,319,399 - Shewana3_1950 0.16 +0.4 2,319,433 - Shewana3_1950 0.19 +1.3 2,319,448 + Shewana3_1950 0.20 +1.0 2,319,456 - Shewana3_1950 0.21 +1.3 2,319,571 - Shewana3_1950 0.33 +1.0 2,319,584 - Shewana3_1950 0.34 +1.0 2,319,686 + Shewana3_1950 0.44 +0.4 2,319,811 + Shewana3_1950 0.57 +1.0 2,319,887 - Shewana3_1950 0.65 -0.7 2,319,887 - Shewana3_1950 0.65 -0.3 2,320,041 - Shewana3_1950 0.80 -1.3 2,320,083 + Shewana3_1950 0.84 +2.0 2,320,297 + +0.4 2,320,334 - Shewana3_1951 0.13 +2.0 2,320,406 + Shewana3_1951 0.23 +2.0 2,320,505 - Shewana3_1951 0.36 +2.6 2,320,540 - Shewana3_1951 0.40 +1.3 2,320,568 - Shewana3_1951 0.44 +0.8 2,320,857 - Shewana3_1951 0.82 -0.5 2,321,181 + +0.3 2,321,193 - -1.5 2,321,268 - +0.0 2,321,323 - -0.3 2,321,409 + Shewana3_1952 0.10 +0.7 2,321,437 + Shewana3_1952 0.11 -1.6 2,321,460 + Shewana3_1952 0.12 +0.4 2,321,761 + Shewana3_1952 0.23 -0.1 2,321,790 + Shewana3_1952 0.24 -0.4 2,321,795 + Shewana3_1952 0.24 -0.9
Or see this region's nucleotide sequence