Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1946 and Shewana3_1947 overlap by 26 nucleotides Shewana3_1947 and Shewana3_1948 overlap by 1 nucleotides Shewana3_1948 and Shewana3_1949 are separated by 211 nucleotides
Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701
_1946
Shewana3_1947: Shewana3_1947 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,315,676 to 2,316,620
_1947
Shewana3_1948: Shewana3_1948 - hypothetical protein (RefSeq), at 2,316,620 to 2,318,128
_1948
Shewana3_1949: Shewana3_1949 - hypothetical protein (RefSeq), at 2,318,340 to 2,319,161
_1949
Position (kb)
2316
2317
2318
2319 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2315.642 kb on - strand at 2315.896 kb on - strand, within Shewana3_1947 at 2315.920 kb on - strand, within Shewana3_1947 at 2315.999 kb on - strand, within Shewana3_1947 at 2316.259 kb on - strand, within Shewana3_1947 at 2316.469 kb on - strand, within Shewana3_1947 at 2316.665 kb on + strand at 2316.751 kb on - strand at 2316.910 kb on - strand, within Shewana3_1948 at 2316.985 kb on + strand at 2317.101 kb on - strand, within Shewana3_1948 at 2317.696 kb on + strand, within Shewana3_1948 at 2317.722 kb on + strand, within Shewana3_1948 at 2317.730 kb on - strand, within Shewana3_1948 at 2317.820 kb on + strand, within Shewana3_1948 at 2317.885 kb on - strand, within Shewana3_1948 at 2318.006 kb on + strand at 2318.014 kb on - strand at 2318.248 kb on + strand at 2318.248 kb on + strand at 2318.248 kb on + strand at 2318.248 kb on + strand at 2318.252 kb on - strand at 2318.374 kb on + strand at 2318.382 kb on - strand at 2318.382 kb on - strand at 2318.392 kb on - strand at 2318.544 kb on + strand, within Shewana3_1949 at 2318.554 kb on + strand, within Shewana3_1949 at 2318.554 kb on + strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.562 kb on - strand, within Shewana3_1949 at 2318.718 kb on - strand, within Shewana3_1949 at 2318.718 kb on - strand, within Shewana3_1949 at 2318.867 kb on + strand, within Shewana3_1949 at 2318.875 kb on - strand, within Shewana3_1949 at 2318.964 kb on + strand, within Shewana3_1949 at 2319.068 kb on - strand, within Shewana3_1949 at 2319.077 kb on + strand, within Shewana3_1949
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,315,642 - +1.0 2,315,896 - Shewana3_1947 0.23 +0.6 2,315,920 - Shewana3_1947 0.26 -1.5 2,315,999 - Shewana3_1947 0.34 +1.3 2,316,259 - Shewana3_1947 0.62 +1.1 2,316,469 - Shewana3_1947 0.84 -1.8 2,316,665 + +2.0 2,316,751 - +0.1 2,316,910 - Shewana3_1948 0.19 +0.8 2,316,985 + +2.0 2,317,101 - Shewana3_1948 0.32 -0.3 2,317,696 + Shewana3_1948 0.71 +2.0 2,317,722 + Shewana3_1948 0.73 +0.0 2,317,730 - Shewana3_1948 0.74 +0.5 2,317,820 + Shewana3_1948 0.80 -0.6 2,317,885 - Shewana3_1948 0.84 +0.7 2,318,006 + -0.8 2,318,014 - +0.5 2,318,248 + +0.0 2,318,248 + +2.0 2,318,248 + +2.0 2,318,248 + +1.0 2,318,252 - +0.4 2,318,374 + +0.4 2,318,382 - +0.6 2,318,382 - -1.4 2,318,392 - -0.1 2,318,544 + Shewana3_1949 0.25 +0.0 2,318,554 + Shewana3_1949 0.26 +0.4 2,318,554 + Shewana3_1949 0.26 -0.3 2,318,562 - Shewana3_1949 0.27 -0.8 2,318,562 - Shewana3_1949 0.27 +2.0 2,318,562 - Shewana3_1949 0.27 -0.2 2,318,562 - Shewana3_1949 0.27 +2.0 2,318,562 - Shewana3_1949 0.27 -0.6 2,318,562 - Shewana3_1949 0.27 +0.5 2,318,718 - Shewana3_1949 0.46 -0.8 2,318,718 - Shewana3_1949 0.46 +0.4 2,318,867 + Shewana3_1949 0.64 +0.8 2,318,875 - Shewana3_1949 0.65 +0.0 2,318,964 + Shewana3_1949 0.76 -0.1 2,319,068 - Shewana3_1949 0.89 -0.5 2,319,077 + Shewana3_1949 0.90 -0.5
Or see this region's nucleotide sequence