Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1923 and Shewana3_1924 are separated by 232 nucleotides Shewana3_1924 and Shewana3_1925 are separated by 131 nucleotides
Shewana3_1923: Shewana3_1923 - AraC family transcriptional regulator (RefSeq), at 2,286,178 to 2,286,990
_1923
Shewana3_1924: Shewana3_1924 - glucan 1,4-alpha-glucosidase (RefSeq), at 2,287,223 to 2,289,736
_1924
Shewana3_1925: Shewana3_1925 - major facilitator transporter (RefSeq), at 2,289,868 to 2,291,463
_1925
Position (kb)
2287
2288
2289
2290 Strain fitness (log2 ratio)
-1
0
1
2 at 2286.405 kb on + strand, within Shewana3_1923 at 2286.490 kb on + strand, within Shewana3_1923 at 2286.490 kb on + strand, within Shewana3_1923 at 2286.498 kb on - strand, within Shewana3_1923 at 2286.502 kb on - strand, within Shewana3_1923 at 2286.534 kb on - strand, within Shewana3_1923 at 2286.617 kb on + strand, within Shewana3_1923 at 2286.630 kb on + strand, within Shewana3_1923 at 2286.847 kb on - strand, within Shewana3_1923 at 2286.877 kb on - strand, within Shewana3_1923 at 2286.922 kb on + strand at 2287.086 kb on - strand at 2287.111 kb on + strand at 2287.199 kb on + strand at 2287.406 kb on + strand at 2287.437 kb on - strand at 2287.587 kb on - strand, within Shewana3_1924 at 2287.666 kb on - strand, within Shewana3_1924 at 2287.825 kb on - strand, within Shewana3_1924 at 2287.945 kb on - strand, within Shewana3_1924 at 2288.042 kb on - strand, within Shewana3_1924 at 2288.057 kb on + strand, within Shewana3_1924 at 2288.128 kb on - strand, within Shewana3_1924 at 2288.316 kb on - strand, within Shewana3_1924 at 2288.316 kb on - strand, within Shewana3_1924 at 2288.504 kb on + strand, within Shewana3_1924 at 2288.704 kb on - strand, within Shewana3_1924 at 2288.748 kb on - strand, within Shewana3_1924 at 2288.769 kb on + strand, within Shewana3_1924 at 2289.297 kb on + strand, within Shewana3_1924 at 2289.468 kb on + strand, within Shewana3_1924 at 2289.874 kb on - strand at 2289.895 kb on - strand at 2289.962 kb on - strand at 2290.028 kb on - strand, within Shewana3_1925 at 2290.132 kb on - strand, within Shewana3_1925 at 2290.306 kb on + strand, within Shewana3_1925 at 2290.346 kb on + strand, within Shewana3_1925 at 2290.653 kb on - strand, within Shewana3_1925
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,286,405 + Shewana3_1923 0.28 -0.0 2,286,490 + Shewana3_1923 0.38 +0.2 2,286,490 + Shewana3_1923 0.38 -0.5 2,286,498 - Shewana3_1923 0.39 +0.3 2,286,502 - Shewana3_1923 0.40 -0.0 2,286,534 - Shewana3_1923 0.44 -0.0 2,286,617 + Shewana3_1923 0.54 -0.9 2,286,630 + Shewana3_1923 0.56 +1.8 2,286,847 - Shewana3_1923 0.82 +1.0 2,286,877 - Shewana3_1923 0.86 +1.0 2,286,922 + +0.9 2,287,086 - +0.4 2,287,111 + +0.3 2,287,199 + -0.6 2,287,406 + -0.0 2,287,437 - +0.8 2,287,587 - Shewana3_1924 0.14 -0.3 2,287,666 - Shewana3_1924 0.18 -0.5 2,287,825 - Shewana3_1924 0.24 -0.5 2,287,945 - Shewana3_1924 0.29 -0.7 2,288,042 - Shewana3_1924 0.33 -0.3 2,288,057 + Shewana3_1924 0.33 -0.7 2,288,128 - Shewana3_1924 0.36 -1.2 2,288,316 - Shewana3_1924 0.43 -0.0 2,288,316 - Shewana3_1924 0.43 -0.5 2,288,504 + Shewana3_1924 0.51 +0.6 2,288,704 - Shewana3_1924 0.59 -1.5 2,288,748 - Shewana3_1924 0.61 -0.3 2,288,769 + Shewana3_1924 0.61 +0.8 2,289,297 + Shewana3_1924 0.82 +0.5 2,289,468 + Shewana3_1924 0.89 +2.0 2,289,874 - -0.2 2,289,895 - -0.3 2,289,962 - +1.0 2,290,028 - Shewana3_1925 0.10 -0.4 2,290,132 - Shewana3_1925 0.17 +2.0 2,290,306 + Shewana3_1925 0.27 -0.3 2,290,346 + Shewana3_1925 0.30 +0.3 2,290,653 - Shewana3_1925 0.49 +1.0
Or see this region's nucleotide sequence