Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1842 and Shewana3_1843 are separated by 152 nucleotides Shewana3_1843 and Shewana3_1844 are separated by 24 nucleotides Shewana3_1844 and Shewana3_1845 are separated by 13 nucleotides
Shewana3_1842: Shewana3_1842 - hypothetical protein (RefSeq), at 2,182,927 to 2,183,268
_1842
Shewana3_1843: Shewana3_1843 - hypothetical protein (RefSeq), at 2,183,421 to 2,183,771
_1843
Shewana3_1844: Shewana3_1844 - hypothetical protein (RefSeq), at 2,183,796 to 2,183,996
_1844
Shewana3_1845: Shewana3_1845 - hypothetical protein (RefSeq), at 2,184,010 to 2,187,216
_1845
Position (kb) 2183
2184 Strain fitness (log2 ratio) -1
0
1
2 at 2183.188 kb on - strand, within Shewana3_1842 at 2183.197 kb on + strand, within Shewana3_1842 at 2183.253 kb on + strand at 2183.598 kb on - strand, within Shewana3_1843 at 2184.517 kb on + strand, within Shewana3_1845 at 2184.524 kb on + strand, within Shewana3_1845 at 2184.567 kb on - strand, within Shewana3_1845 at 2184.672 kb on + strand, within Shewana3_1845 at 2184.763 kb on + strand, within Shewana3_1845
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 2,183,188 - Shewana3_1842 0.76 -0.4 2,183,197 + Shewana3_1842 0.79 +1.5 2,183,253 + -0.7 2,183,598 - Shewana3_1843 0.50 +1.9 2,184,517 + Shewana3_1845 0.16 +0.6 2,184,524 + Shewana3_1845 0.16 -0.4 2,184,567 - Shewana3_1845 0.17 -0.7 2,184,672 + Shewana3_1845 0.21 +0.9 2,184,763 + Shewana3_1845 0.23 -0.9
Or see this region's nucleotide sequence