Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1594

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1593 and Shewana3_1594 overlap by 1 nucleotidesShewana3_1594 and Shewana3_1595 are separated by 239 nucleotides Shewana3_1593: Shewana3_1593 - hypothetical protein (RefSeq), at 1,869,518 to 1,870,642 _1593 Shewana3_1594: Shewana3_1594 - hypothetical protein (RefSeq), at 1,870,642 to 1,871,157 _1594 Shewana3_1595: Shewana3_1595 - PKD domain-containing protein (RefSeq), at 1,871,397 to 1,874,243 _1595 Position (kb) 1870 1871 1872Strain fitness (log2 ratio) -2 -1 0 1 2at 1869.673 kb on + strand, within Shewana3_1593at 1869.785 kb on - strand, within Shewana3_1593at 1870.106 kb on - strand, within Shewana3_1593at 1870.224 kb on - strand, within Shewana3_1593at 1870.379 kb on - strand, within Shewana3_1593at 1870.389 kb on - strand, within Shewana3_1593at 1870.717 kb on + strand, within Shewana3_1594at 1870.837 kb on + strand, within Shewana3_1594at 1870.837 kb on + strand, within Shewana3_1594at 1870.845 kb on - strand, within Shewana3_1594at 1871.167 kb on - strandat 1871.172 kb on - strandat 1871.206 kb on - strandat 1871.487 kb on + strandat 1871.548 kb on + strandat 1871.550 kb on - strandat 1871.615 kb on + strandat 1871.789 kb on + strand, within Shewana3_1595at 1871.828 kb on + strand, within Shewana3_1595at 1871.828 kb on + strand, within Shewana3_1595at 1871.836 kb on - strand, within Shewana3_1595at 1871.836 kb on - strand, within Shewana3_1595at 1871.838 kb on - strand, within Shewana3_1595at 1871.991 kb on + strand, within Shewana3_1595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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1,869,673 + Shewana3_1593 0.14 +1.1
1,869,785 - Shewana3_1593 0.24 -0.6
1,870,106 - Shewana3_1593 0.52 +1.8
1,870,224 - Shewana3_1593 0.63 +0.2
1,870,379 - Shewana3_1593 0.77 -0.5
1,870,389 - Shewana3_1593 0.77 -0.8
1,870,717 + Shewana3_1594 0.15 -0.6
1,870,837 + Shewana3_1594 0.38 -0.9
1,870,837 + Shewana3_1594 0.38 +0.8
1,870,845 - Shewana3_1594 0.39 +0.8
1,871,167 - +0.2
1,871,172 - +1.8
1,871,206 - -0.5
1,871,487 + +0.5
1,871,548 + -0.3
1,871,550 - +0.1
1,871,615 + -0.8
1,871,789 + Shewana3_1595 0.14 +0.2
1,871,828 + Shewana3_1595 0.15 +0.9
1,871,828 + Shewana3_1595 0.15 -0.5
1,871,836 - Shewana3_1595 0.15 +0.8
1,871,836 - Shewana3_1595 0.15 +1.8
1,871,838 - Shewana3_1595 0.15 -2.5
1,871,991 + Shewana3_1595 0.21 -0.0

Or see this region's nucleotide sequence