Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1594
Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.125 vol% |
---|---|---|---|---|---|
remove | |||||
1,869,673 | + | Shewana3_1593 | 0.14 | +1.1 | |
1,869,785 | - | Shewana3_1593 | 0.24 | -0.6 | |
1,870,106 | - | Shewana3_1593 | 0.52 | +1.8 | |
1,870,224 | - | Shewana3_1593 | 0.63 | +0.2 | |
1,870,379 | - | Shewana3_1593 | 0.77 | -0.5 | |
1,870,389 | - | Shewana3_1593 | 0.77 | -0.8 | |
1,870,717 | + | Shewana3_1594 | 0.15 | -0.6 | |
1,870,837 | + | Shewana3_1594 | 0.38 | -0.9 | |
1,870,837 | + | Shewana3_1594 | 0.38 | +0.8 | |
1,870,845 | - | Shewana3_1594 | 0.39 | +0.8 | |
1,871,167 | - | +0.2 | |||
1,871,172 | - | +1.8 | |||
1,871,206 | - | -0.5 | |||
1,871,487 | + | +0.5 | |||
1,871,548 | + | -0.3 | |||
1,871,550 | - | +0.1 | |||
1,871,615 | + | -0.8 | |||
1,871,789 | + | Shewana3_1595 | 0.14 | +0.2 | |
1,871,828 | + | Shewana3_1595 | 0.15 | +0.9 | |
1,871,828 | + | Shewana3_1595 | 0.15 | -0.5 | |
1,871,836 | - | Shewana3_1595 | 0.15 | +0.8 | |
1,871,836 | - | Shewana3_1595 | 0.15 | +1.8 | |
1,871,838 | - | Shewana3_1595 | 0.15 | -2.5 | |
1,871,991 | + | Shewana3_1595 | 0.21 | -0.0 |
Or see this region's nucleotide sequence