Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1487

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1486 and Shewana3_1487 are separated by 249 nucleotidesShewana3_1487 and Shewana3_1488 are separated by 89 nucleotides Shewana3_1486: Shewana3_1486 - DNA topoisomerase III (RefSeq), at 1,729,880 to 1,731,994 _1486 Shewana3_1487: Shewana3_1487 - porin (RefSeq), at 1,732,244 to 1,733,413 _1487 Shewana3_1488: Shewana3_1488 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,733,503 to 1,735,029 _1488 Position (kb) 1732 1733 1734Strain fitness (log2 ratio) -2 -1 0 1 2at 1731.342 kb on + strand, within Shewana3_1486at 1731.764 kb on + strand, within Shewana3_1486at 1731.772 kb on - strand, within Shewana3_1486at 1732.520 kb on - strand, within Shewana3_1487at 1732.877 kb on - strand, within Shewana3_1487at 1733.095 kb on + strand, within Shewana3_1487at 1733.165 kb on + strand, within Shewana3_1487at 1733.252 kb on + strand, within Shewana3_1487at 1733.366 kb on + strandat 1733.673 kb on - strand, within Shewana3_1488at 1733.797 kb on - strand, within Shewana3_1488at 1733.798 kb on - strand, within Shewana3_1488at 1733.938 kb on + strand, within Shewana3_1488at 1734.030 kb on - strand, within Shewana3_1488at 1734.124 kb on - strand, within Shewana3_1488at 1734.124 kb on - strand, within Shewana3_1488at 1734.380 kb on + strand, within Shewana3_1488

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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1,731,342 + Shewana3_1486 0.69 +0.3
1,731,764 + Shewana3_1486 0.89 +0.6
1,731,772 - Shewana3_1486 0.89 +1.8
1,732,520 - Shewana3_1487 0.24 -0.8
1,732,877 - Shewana3_1487 0.54 +1.8
1,733,095 + Shewana3_1487 0.73 -2.0
1,733,165 + Shewana3_1487 0.79 -0.0
1,733,252 + Shewana3_1487 0.86 -0.9
1,733,366 + -0.1
1,733,673 - Shewana3_1488 0.11 +1.0
1,733,797 - Shewana3_1488 0.19 +1.7
1,733,798 - Shewana3_1488 0.19 +0.4
1,733,938 + Shewana3_1488 0.28 -1.2
1,734,030 - Shewana3_1488 0.35 -0.7
1,734,124 - Shewana3_1488 0.41 +0.5
1,734,124 - Shewana3_1488 0.41 +0.3
1,734,380 + Shewana3_1488 0.57 -1.0

Or see this region's nucleotide sequence