Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1452 and Shewana3_1453 overlap by 8 nucleotides Shewana3_1453 and Shewana3_1454 are separated by 93 nucleotides Shewana3_1454 and Shewana3_1455 overlap by 7 nucleotides
Shewana3_1452: Shewana3_1452 - hypothetical protein (RefSeq), at 1,684,198 to 1,684,902
_1452
Shewana3_1453: Shewana3_1453 - RNA polymerase sigma factor (RefSeq), at 1,684,895 to 1,685,458
_1453
Shewana3_1454: Shewana3_1454 - hypothetical protein (RefSeq), at 1,685,552 to 1,687,213
_1454
Shewana3_1455: Shewana3_1455 - TPR repeat-containing protein (RefSeq), at 1,687,207 to 1,689,279
_1455
Position (kb)
1685
1686
1687
1688 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1684.660 kb on - strand, within Shewana3_1452 at 1684.686 kb on + strand, within Shewana3_1452 at 1684.760 kb on - strand, within Shewana3_1452 at 1684.996 kb on - strand, within Shewana3_1453 at 1685.044 kb on + strand, within Shewana3_1453 at 1685.046 kb on + strand, within Shewana3_1453 at 1685.067 kb on + strand, within Shewana3_1453 at 1685.148 kb on - strand, within Shewana3_1453 at 1685.226 kb on + strand, within Shewana3_1453 at 1685.226 kb on + strand, within Shewana3_1453 at 1685.317 kb on + strand, within Shewana3_1453 at 1685.595 kb on + strand at 1685.609 kb on - strand at 1685.701 kb on - strand at 1685.724 kb on - strand, within Shewana3_1454 at 1685.762 kb on - strand, within Shewana3_1454 at 1685.776 kb on - strand, within Shewana3_1454 at 1685.778 kb on + strand, within Shewana3_1454 at 1685.839 kb on - strand, within Shewana3_1454 at 1685.972 kb on - strand, within Shewana3_1454 at 1686.162 kb on - strand, within Shewana3_1454 at 1686.241 kb on - strand, within Shewana3_1454 at 1686.274 kb on - strand, within Shewana3_1454 at 1686.289 kb on - strand, within Shewana3_1454 at 1686.612 kb on - strand, within Shewana3_1454 at 1686.659 kb on + strand, within Shewana3_1454 at 1686.907 kb on - strand, within Shewana3_1454 at 1686.933 kb on - strand, within Shewana3_1454 at 1687.041 kb on - strand, within Shewana3_1454 at 1687.061 kb on + strand at 1687.296 kb on - strand at 1687.296 kb on - strand at 1687.463 kb on + strand, within Shewana3_1455 at 1687.613 kb on + strand, within Shewana3_1455 at 1687.659 kb on + strand, within Shewana3_1455 at 1687.682 kb on - strand, within Shewana3_1455 at 1687.762 kb on + strand, within Shewana3_1455 at 1688.114 kb on + strand, within Shewana3_1455 at 1688.122 kb on - strand, within Shewana3_1455 at 1688.124 kb on + strand, within Shewana3_1455 at 1688.199 kb on - strand, within Shewana3_1455
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,684,660 - Shewana3_1452 0.66 -1.1 1,684,686 + Shewana3_1452 0.69 -0.6 1,684,760 - Shewana3_1452 0.80 -1.0 1,684,996 - Shewana3_1453 0.18 +0.1 1,685,044 + Shewana3_1453 0.26 -0.3 1,685,046 + Shewana3_1453 0.27 -0.3 1,685,067 + Shewana3_1453 0.30 +0.0 1,685,148 - Shewana3_1453 0.45 -0.4 1,685,226 + Shewana3_1453 0.59 -0.1 1,685,226 + Shewana3_1453 0.59 -1.6 1,685,317 + Shewana3_1453 0.75 +0.1 1,685,595 + -1.4 1,685,609 - -0.3 1,685,701 - +0.6 1,685,724 - Shewana3_1454 0.10 -2.7 1,685,762 - Shewana3_1454 0.13 -0.6 1,685,776 - Shewana3_1454 0.13 -0.6 1,685,778 + Shewana3_1454 0.14 -1.9 1,685,839 - Shewana3_1454 0.17 +1.8 1,685,972 - Shewana3_1454 0.25 +0.3 1,686,162 - Shewana3_1454 0.37 -1.4 1,686,241 - Shewana3_1454 0.41 -0.9 1,686,274 - Shewana3_1454 0.43 +0.7 1,686,289 - Shewana3_1454 0.44 -1.3 1,686,612 - Shewana3_1454 0.64 +0.7 1,686,659 + Shewana3_1454 0.67 -1.1 1,686,907 - Shewana3_1454 0.82 -0.9 1,686,933 - Shewana3_1454 0.83 -1.1 1,687,041 - Shewana3_1454 0.90 +1.3 1,687,061 + +1.7 1,687,296 - +1.1 1,687,296 - -1.6 1,687,463 + Shewana3_1455 0.12 +1.1 1,687,613 + Shewana3_1455 0.20 -0.3 1,687,659 + Shewana3_1455 0.22 -0.3 1,687,682 - Shewana3_1455 0.23 -0.6 1,687,762 + Shewana3_1455 0.27 -0.3 1,688,114 + Shewana3_1455 0.44 +0.3 1,688,122 - Shewana3_1455 0.44 -1.7 1,688,124 + Shewana3_1455 0.44 -0.5 1,688,199 - Shewana3_1455 0.48 -2.5
Or see this region's nucleotide sequence