Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1424 and Shewana3_1425 are separated by 91 nucleotides Shewana3_1425 and Shewana3_1426 are separated by 172 nucleotides
Shewana3_1424: Shewana3_1424 - phospholipase D/transphosphatidylase (RefSeq), at 1,653,596 to 1,655,230
_1424
Shewana3_1425: Shewana3_1425 - response regulator receiver modulated CheW protein (RefSeq), at 1,655,322 to 1,656,221
_1425
Shewana3_1426: Shewana3_1426 - serine/threonine transporter SstT (RefSeq), at 1,656,394 to 1,657,620
_1426
Position (kb)
1655
1656
1657 Strain fitness (log2 ratio)
-2
-1
0
1 at 1654.446 kb on - strand, within Shewana3_1424 at 1654.868 kb on - strand, within Shewana3_1424 at 1655.078 kb on + strand at 1655.224 kb on - strand at 1655.229 kb on + strand at 1655.332 kb on + strand at 1655.381 kb on + strand at 1655.381 kb on + strand at 1655.420 kb on + strand, within Shewana3_1425 at 1655.428 kb on - strand, within Shewana3_1425 at 1655.542 kb on + strand, within Shewana3_1425 at 1655.550 kb on - strand, within Shewana3_1425 at 1656.279 kb on + strand at 1656.344 kb on + strand at 1656.565 kb on + strand, within Shewana3_1426 at 1656.673 kb on + strand, within Shewana3_1426 at 1656.688 kb on + strand, within Shewana3_1426 at 1656.731 kb on + strand, within Shewana3_1426 at 1656.746 kb on + strand, within Shewana3_1426 at 1656.866 kb on + strand, within Shewana3_1426 at 1656.871 kb on + strand, within Shewana3_1426 at 1656.871 kb on + strand, within Shewana3_1426 at 1657.046 kb on - strand, within Shewana3_1426 at 1657.048 kb on + strand, within Shewana3_1426 at 1657.157 kb on - strand, within Shewana3_1426
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,654,446 - Shewana3_1424 0.52 -0.3 1,654,868 - Shewana3_1424 0.78 +0.5 1,655,078 + -0.5 1,655,224 - -2.1 1,655,229 + +0.4 1,655,332 + -0.9 1,655,381 + +0.5 1,655,381 + -1.3 1,655,420 + Shewana3_1425 0.11 -1.2 1,655,428 - Shewana3_1425 0.12 +1.7 1,655,542 + Shewana3_1425 0.24 -0.7 1,655,550 - Shewana3_1425 0.25 +0.7 1,656,279 + -0.8 1,656,344 + +0.6 1,656,565 + Shewana3_1426 0.14 +0.1 1,656,673 + Shewana3_1426 0.23 -1.1 1,656,688 + Shewana3_1426 0.24 +0.2 1,656,731 + Shewana3_1426 0.27 -1.1 1,656,746 + Shewana3_1426 0.29 -0.1 1,656,866 + Shewana3_1426 0.38 +0.2 1,656,871 + Shewana3_1426 0.39 -1.3 1,656,871 + Shewana3_1426 0.39 -0.9 1,657,046 - Shewana3_1426 0.53 -0.8 1,657,048 + Shewana3_1426 0.53 +0.9 1,657,157 - Shewana3_1426 0.62 -0.4
Or see this region's nucleotide sequence