Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1138
Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.125 vol% |
---|---|---|---|---|---|
remove | |||||
1,340,541 | - | +1.1 | |||
1,340,560 | - | +0.7 | |||
1,340,688 | + | Shewana3_1136 | 0.19 | -0.5 | |
1,340,754 | + | Shewana3_1136 | 0.43 | -1.2 | |
1,340,845 | - | Shewana3_1136 | 0.76 | -0.3 | |
1,340,933 | - | +0.2 | |||
1,340,940 | + | -0.1 | |||
1,340,985 | - | Shewana3_1137 | 0.11 | -0.5 | |
1,341,106 | - | Shewana3_1137 | 0.43 | -0.9 | |
1,341,154 | + | Shewana3_1137 | 0.56 | +0.8 | |
1,341,202 | + | Shewana3_1137 | 0.69 | +0.1 | |
1,341,250 | + | Shewana3_1137 | 0.81 | +0.0 | |
1,341,266 | + | Shewana3_1137 | 0.86 | +0.7 | |
1,341,482 | + | +0.0 | |||
1,341,490 | - | +0.2 | |||
1,341,514 | - | +0.5 | |||
1,341,863 | - | Shewana3_1138 | 0.52 | -0.0 | |
1,341,949 | + | Shewana3_1138 | 0.65 | -0.5 | |
1,341,957 | - | Shewana3_1138 | 0.66 | -1.0 | |
1,341,983 | - | Shewana3_1138 | 0.70 | -0.9 | |
1,342,164 | + | -0.8 | |||
1,342,164 | + | -0.9 | |||
1,342,254 | + | +0.3 | |||
1,342,254 | + | +0.1 | |||
1,342,342 | + | +0.9 | |||
1,342,371 | - | +0.1 | |||
1,342,664 | - | -0.4 | |||
1,342,733 | - | -1.6 | |||
1,343,146 | + | thrA | Shewana3_1139 | 0.13 | +0.8 |
1,343,146 | + | thrA | Shewana3_1139 | 0.13 | +1.3 |
1,343,146 | + | thrA | Shewana3_1139 | 0.13 | +0.2 |
1,343,154 | - | thrA | Shewana3_1139 | 0.13 | -0.2 |
Or see this region's nucleotide sequence