Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1055 and Shewana3_1056 are separated by 15 nucleotides Shewana3_1056 and Shewana3_1057 are separated by 26 nucleotides Shewana3_1057 and Shewana3_1058 are separated by 516 nucleotides
Shewana3_1055: Shewana3_1055 - trimethylamine-N-oxide reductase TorA (RefSeq), at 1,236,182 to 1,238,671
_1055
Shewana3_1056: Shewana3_1056 - trimethylamine-N-oxide reductase c-type cytochrome TorC (RefSeq), at 1,238,687 to 1,239,865
_1056
Shewana3_1057: Shewana3_1057 - periplasmic nitrate reductase NapE (RefSeq), at 1,239,892 to 1,240,062
_1057
Shewana3_1058: Shewana3_1058 - xanthine/uracil/vitamin C permease (RefSeq), at 1,240,579 to 1,241,931
_1058
Position (kb)
1238
1239
1240 Strain fitness (log2 ratio)
-1
0
1 at 1237.917 kb on + strand, within Shewana3_1055 at 1238.024 kb on + strand, within Shewana3_1055 at 1238.024 kb on + strand, within Shewana3_1055 at 1238.066 kb on + strand, within Shewana3_1055 at 1238.105 kb on + strand, within Shewana3_1055 at 1238.113 kb on - strand, within Shewana3_1055 at 1238.130 kb on + strand, within Shewana3_1055 at 1238.185 kb on + strand, within Shewana3_1055 at 1238.193 kb on - strand, within Shewana3_1055 at 1238.215 kb on - strand, within Shewana3_1055 at 1238.312 kb on + strand, within Shewana3_1055 at 1238.403 kb on - strand, within Shewana3_1055 at 1238.474 kb on + strand at 1238.489 kb on - strand at 1238.489 kb on - strand at 1238.526 kb on + strand at 1238.574 kb on + strand at 1238.856 kb on - strand, within Shewana3_1056 at 1238.856 kb on - strand, within Shewana3_1056 at 1238.890 kb on - strand, within Shewana3_1056 at 1239.242 kb on + strand, within Shewana3_1056 at 1239.714 kb on - strand, within Shewana3_1056 at 1239.734 kb on - strand, within Shewana3_1056 at 1240.453 kb on + strand at 1240.583 kb on - strand at 1240.743 kb on - strand, within Shewana3_1058 at 1240.796 kb on + strand, within Shewana3_1058 at 1240.815 kb on - strand, within Shewana3_1058 at 1240.817 kb on - strand, within Shewana3_1058
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,237,917 + Shewana3_1055 0.70 -1.1 1,238,024 + Shewana3_1055 0.74 -0.4 1,238,024 + Shewana3_1055 0.74 -1.4 1,238,066 + Shewana3_1055 0.76 -1.3 1,238,105 + Shewana3_1055 0.77 -0.8 1,238,113 - Shewana3_1055 0.78 -0.1 1,238,130 + Shewana3_1055 0.78 -1.2 1,238,185 + Shewana3_1055 0.80 -1.5 1,238,193 - Shewana3_1055 0.81 -0.0 1,238,215 - Shewana3_1055 0.82 -0.1 1,238,312 + Shewana3_1055 0.86 +1.0 1,238,403 - Shewana3_1055 0.89 +0.2 1,238,474 + -0.3 1,238,489 - +0.4 1,238,489 - -0.1 1,238,526 + -0.2 1,238,574 + +0.0 1,238,856 - Shewana3_1056 0.14 +0.4 1,238,856 - Shewana3_1056 0.14 +0.3 1,238,890 - Shewana3_1056 0.17 -0.2 1,239,242 + Shewana3_1056 0.47 -0.2 1,239,714 - Shewana3_1056 0.87 -0.5 1,239,734 - Shewana3_1056 0.89 +0.1 1,240,453 + -0.7 1,240,583 - -0.9 1,240,743 - Shewana3_1058 0.12 -1.0 1,240,796 + Shewana3_1058 0.16 +0.1 1,240,815 - Shewana3_1058 0.17 +0.1 1,240,817 - Shewana3_1058 0.18 -0.6
Or see this region's nucleotide sequence