Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0991

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlipB and Shewana3_0990 are separated by 92 nucleotidesShewana3_0990 and Shewana3_0991 are separated by 121 nucleotidesShewana3_0991 and Shewana3_0992 are separated by 144 nucleotidesShewana3_0992 and Shewana3_0993 overlap by 17 nucleotides Shewana3_0989: lipB - lipoyltransferase (RefSeq), at 1,159,865 to 1,160,518 lipB Shewana3_0990: Shewana3_0990 - hypothetical protein (RefSeq), at 1,160,611 to 1,160,877 _0990 Shewana3_0991: Shewana3_0991 - penicillin-binding protein 6 (RefSeq), at 1,160,999 to 1,162,174 _0991 Shewana3_0992: Shewana3_0992 - rare lipoprotein A (RefSeq), at 1,162,319 to 1,163,161 _0992 Shewana3_0993: Shewana3_0993 - lytic murein transglycosylase B (RefSeq), at 1,163,145 to 1,164,209 _0993 Position (kb) 1160 1161 1162 1163Strain fitness (log2 ratio) -3 -2 -1 0 1at 1161.637 kb on - strand, within Shewana3_0991at 1162.240 kb on - strandat 1162.310 kb on - strandat 1162.404 kb on - strand, within Shewana3_0992at 1162.438 kb on + strand, within Shewana3_0992at 1162.503 kb on - strand, within Shewana3_0992at 1162.580 kb on - strand, within Shewana3_0992at 1162.605 kb on + strand, within Shewana3_0992at 1162.605 kb on + strand, within Shewana3_0992at 1162.801 kb on - strand, within Shewana3_0992at 1162.902 kb on + strand, within Shewana3_0992at 1162.910 kb on - strand, within Shewana3_0992at 1162.910 kb on - strand, within Shewana3_0992

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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1,161,637 - Shewana3_0991 0.54 -2.8
1,162,240 - -2.0
1,162,310 - -0.9
1,162,404 - Shewana3_0992 0.10 +0.7
1,162,438 + Shewana3_0992 0.14 -0.3
1,162,503 - Shewana3_0992 0.22 -0.3
1,162,580 - Shewana3_0992 0.31 -1.4
1,162,605 + Shewana3_0992 0.34 +1.7
1,162,605 + Shewana3_0992 0.34 +0.7
1,162,801 - Shewana3_0992 0.57 -1.4
1,162,902 + Shewana3_0992 0.69 +1.7
1,162,910 - Shewana3_0992 0.70 -0.3
1,162,910 - Shewana3_0992 0.70 +0.7

Or see this region's nucleotide sequence