Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0948 and Shewana3_0949 are separated by 150 nucleotides Shewana3_0949 and Shewana3_0950 are separated by 175 nucleotides
Shewana3_0948: Shewana3_0948 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,107,881 to 1,109,884
_0948
Shewana3_0949: Shewana3_0949 - DNA polymerase IV (RefSeq), at 1,110,035 to 1,111,114
_0949
Shewana3_0950: Shewana3_0950 - M20C family Xaa-His dipeptidase (RefSeq), at 1,111,290 to 1,112,753
_0950
Position (kb)
1110
1111
1112 Strain fitness (log2 ratio)
-2
-1
0
1 at 1109.086 kb on + strand, within Shewana3_0948 at 1109.087 kb on - strand, within Shewana3_0948 at 1109.132 kb on - strand, within Shewana3_0948 at 1109.378 kb on + strand, within Shewana3_0948 at 1109.566 kb on - strand, within Shewana3_0948 at 1109.588 kb on + strand, within Shewana3_0948 at 1109.619 kb on - strand, within Shewana3_0948 at 1109.732 kb on + strand at 1109.955 kb on + strand at 1110.317 kb on + strand, within Shewana3_0949 at 1110.317 kb on + strand, within Shewana3_0949 at 1110.325 kb on - strand, within Shewana3_0949 at 1110.351 kb on + strand, within Shewana3_0949 at 1110.384 kb on - strand, within Shewana3_0949 at 1110.527 kb on - strand, within Shewana3_0949 at 1110.527 kb on - strand, within Shewana3_0949 at 1110.646 kb on + strand, within Shewana3_0949 at 1110.646 kb on + strand, within Shewana3_0949 at 1110.798 kb on + strand, within Shewana3_0949 at 1110.841 kb on - strand, within Shewana3_0949 at 1110.873 kb on - strand, within Shewana3_0949 at 1110.930 kb on + strand, within Shewana3_0949 at 1111.187 kb on + strand at 1111.187 kb on + strand at 1111.195 kb on - strand at 1111.195 kb on - strand at 1111.344 kb on - strand at 1111.382 kb on + strand at 1111.463 kb on - strand, within Shewana3_0950 at 1111.564 kb on + strand, within Shewana3_0950 at 1111.617 kb on + strand, within Shewana3_0950 at 1111.632 kb on - strand, within Shewana3_0950 at 1111.632 kb on - strand, within Shewana3_0950 at 1111.683 kb on - strand, within Shewana3_0950 at 1111.750 kb on + strand, within Shewana3_0950 at 1111.891 kb on - strand, within Shewana3_0950 at 1111.893 kb on + strand, within Shewana3_0950 at 1111.893 kb on + strand, within Shewana3_0950 at 1111.901 kb on - strand, within Shewana3_0950 at 1112.097 kb on - strand, within Shewana3_0950
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,109,086 + Shewana3_0948 0.60 -0.7 1,109,087 - Shewana3_0948 0.60 -0.6 1,109,132 - Shewana3_0948 0.62 -0.9 1,109,378 + Shewana3_0948 0.75 +0.5 1,109,566 - Shewana3_0948 0.84 +0.0 1,109,588 + Shewana3_0948 0.85 +0.3 1,109,619 - Shewana3_0948 0.87 +0.0 1,109,732 + -0.1 1,109,955 + -0.7 1,110,317 + Shewana3_0949 0.26 -2.1 1,110,317 + Shewana3_0949 0.26 -0.5 1,110,325 - Shewana3_0949 0.27 -0.8 1,110,351 + Shewana3_0949 0.29 -0.7 1,110,384 - Shewana3_0949 0.32 -0.6 1,110,527 - Shewana3_0949 0.46 -0.4 1,110,527 - Shewana3_0949 0.46 -0.9 1,110,646 + Shewana3_0949 0.57 +0.6 1,110,646 + Shewana3_0949 0.57 +1.3 1,110,798 + Shewana3_0949 0.71 -0.4 1,110,841 - Shewana3_0949 0.75 -2.1 1,110,873 - Shewana3_0949 0.78 -1.1 1,110,930 + Shewana3_0949 0.83 -0.2 1,111,187 + +0.7 1,111,187 + +0.1 1,111,195 - -1.8 1,111,195 - -0.0 1,111,344 - +0.7 1,111,382 + +1.2 1,111,463 - Shewana3_0950 0.12 -1.4 1,111,564 + Shewana3_0950 0.19 -1.0 1,111,617 + Shewana3_0950 0.22 -0.1 1,111,632 - Shewana3_0950 0.23 -0.0 1,111,632 - Shewana3_0950 0.23 +0.3 1,111,683 - Shewana3_0950 0.27 +0.3 1,111,750 + Shewana3_0950 0.31 +1.0 1,111,891 - Shewana3_0950 0.41 +0.3 1,111,893 + Shewana3_0950 0.41 -0.2 1,111,893 + Shewana3_0950 0.41 -0.4 1,111,901 - Shewana3_0950 0.42 +0.2 1,112,097 - Shewana3_0950 0.55 -0.0
Or see this region's nucleotide sequence