Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0915 and Shewana3_0916 are separated by 162 nucleotides Shewana3_0916 and Shewana3_0917 are separated by 11 nucleotides Shewana3_0917 and Shewana3_0918 are separated by 185 nucleotides
Shewana3_0915: Shewana3_0915 - OmpA/MotB domain-containing protein (RefSeq), at 1,069,803 to 1,071,260
_0915
Shewana3_0916: Shewana3_0916 - pseudouridine synthase, Rsu (RefSeq), at 1,071,423 to 1,072,133
_0916
Shewana3_0917: Shewana3_0917 - hypothetical protein (RefSeq), at 1,072,145 to 1,072,837
_0917
Shewana3_0918: Shewana3_0918 - Na+/H+ antiporter NhaC (RefSeq), at 1,073,023 to 1,074,360
_0918
Position (kb)
1071
1072
1073 Strain fitness (log2 ratio)
-2
-1
0
1 at 1070.436 kb on - strand, within Shewana3_0915 at 1070.621 kb on + strand, within Shewana3_0915 at 1070.675 kb on - strand, within Shewana3_0915 at 1070.689 kb on - strand, within Shewana3_0915 at 1070.731 kb on + strand, within Shewana3_0915 at 1070.977 kb on - strand, within Shewana3_0915 at 1070.989 kb on - strand, within Shewana3_0915 at 1071.168 kb on + strand at 1071.171 kb on + strand at 1071.173 kb on + strand at 1071.173 kb on + strand at 1071.181 kb on - strand at 1071.313 kb on - strand at 1071.313 kb on - strand at 1071.314 kb on + strand at 1071.466 kb on - strand at 1071.503 kb on + strand, within Shewana3_0916 at 1071.504 kb on + strand, within Shewana3_0916 at 1071.629 kb on - strand, within Shewana3_0916 at 1071.645 kb on - strand, within Shewana3_0916 at 1071.702 kb on + strand, within Shewana3_0916 at 1071.720 kb on - strand, within Shewana3_0916 at 1071.733 kb on + strand, within Shewana3_0916 at 1071.756 kb on - strand, within Shewana3_0916 at 1071.835 kb on + strand, within Shewana3_0916 at 1072.145 kb on - strand at 1072.332 kb on - strand, within Shewana3_0917 at 1072.381 kb on + strand, within Shewana3_0917 at 1072.391 kb on + strand, within Shewana3_0917 at 1072.460 kb on + strand, within Shewana3_0917 at 1072.554 kb on - strand, within Shewana3_0917 at 1072.586 kb on - strand, within Shewana3_0917 at 1072.645 kb on - strand, within Shewana3_0917 at 1072.689 kb on + strand, within Shewana3_0917 at 1072.736 kb on - strand, within Shewana3_0917 at 1072.747 kb on + strand, within Shewana3_0917 at 1072.884 kb on + strand at 1072.892 kb on - strand at 1072.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,070,436 - Shewana3_0915 0.43 +0.5 1,070,621 + Shewana3_0915 0.56 -0.2 1,070,675 - Shewana3_0915 0.60 -0.8 1,070,689 - Shewana3_0915 0.61 -1.6 1,070,731 + Shewana3_0915 0.64 -2.3 1,070,977 - Shewana3_0915 0.81 +1.7 1,070,989 - Shewana3_0915 0.81 -1.4 1,071,168 + +1.0 1,071,171 + -0.0 1,071,173 + +0.0 1,071,173 + -0.2 1,071,181 - -1.2 1,071,313 - -0.9 1,071,313 - -0.8 1,071,314 + -0.5 1,071,466 - +0.5 1,071,503 + Shewana3_0916 0.11 -0.6 1,071,504 + Shewana3_0916 0.11 +0.1 1,071,629 - Shewana3_0916 0.29 -1.3 1,071,645 - Shewana3_0916 0.31 +0.5 1,071,702 + Shewana3_0916 0.39 -2.0 1,071,720 - Shewana3_0916 0.42 -1.6 1,071,733 + Shewana3_0916 0.44 +0.4 1,071,756 - Shewana3_0916 0.47 -1.8 1,071,835 + Shewana3_0916 0.58 -0.0 1,072,145 - -0.7 1,072,332 - Shewana3_0917 0.27 +0.7 1,072,381 + Shewana3_0917 0.34 -0.9 1,072,391 + Shewana3_0917 0.35 -0.9 1,072,460 + Shewana3_0917 0.45 -0.0 1,072,554 - Shewana3_0917 0.59 +0.5 1,072,586 - Shewana3_0917 0.64 -0.2 1,072,645 - Shewana3_0917 0.72 +0.3 1,072,689 + Shewana3_0917 0.78 -0.6 1,072,736 - Shewana3_0917 0.85 -0.0 1,072,747 + Shewana3_0917 0.87 -0.1 1,072,884 + +0.6 1,072,892 - -1.0 1,072,981 - -0.8
Or see this region's nucleotide sequence