Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0860 and Shewana3_0861 are separated by 186 nucleotides Shewana3_0861 and Shewana3_0862 are separated by 430 nucleotides
Shewana3_0860: Shewana3_0860 - hypothetical protein (RefSeq), at 1,001,361 to 1,002,908
_0860
Shewana3_0861: Shewana3_0861 - phospholipase A1 (RefSeq), at 1,003,095 to 1,003,979
_0861
Shewana3_0862: Shewana3_0862 - uroporphyrinogen-III C-methyltransferase (RefSeq), at 1,004,410 to 1,005,240
_0862
Position (kb)
1003
1004 Strain fitness (log2 ratio)
-1
0
1 at 1002.096 kb on - strand, within Shewana3_0860 at 1002.151 kb on + strand, within Shewana3_0860 at 1002.164 kb on - strand, within Shewana3_0860 at 1002.225 kb on - strand, within Shewana3_0860 at 1002.404 kb on - strand, within Shewana3_0860 at 1002.518 kb on - strand, within Shewana3_0860 at 1002.560 kb on - strand, within Shewana3_0860 at 1002.767 kb on + strand at 1002.879 kb on + strand at 1002.881 kb on - strand at 1002.887 kb on - strand at 1003.086 kb on + strand at 1003.127 kb on - strand at 1003.274 kb on + strand, within Shewana3_0861 at 1003.285 kb on + strand, within Shewana3_0861 at 1003.337 kb on - strand, within Shewana3_0861 at 1003.361 kb on - strand, within Shewana3_0861 at 1003.449 kb on + strand, within Shewana3_0861 at 1003.537 kb on + strand, within Shewana3_0861 at 1003.537 kb on + strand, within Shewana3_0861 at 1003.830 kb on + strand, within Shewana3_0861 at 1004.454 kb on - strand at 1004.480 kb on - strand at 1004.533 kb on + strand, within Shewana3_0862 at 1004.533 kb on + strand, within Shewana3_0862 at 1004.577 kb on + strand, within Shewana3_0862 at 1004.622 kb on + strand, within Shewana3_0862 at 1004.622 kb on + strand, within Shewana3_0862 at 1004.622 kb on + strand, within Shewana3_0862 at 1004.630 kb on - strand, within Shewana3_0862 at 1004.635 kb on - strand, within Shewana3_0862 at 1004.827 kb on + strand, within Shewana3_0862 at 1004.951 kb on - strand, within Shewana3_0862
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,002,096 - Shewana3_0860 0.47 -0.3 1,002,151 + Shewana3_0860 0.51 +0.3 1,002,164 - Shewana3_0860 0.52 -0.3 1,002,225 - Shewana3_0860 0.56 +0.7 1,002,404 - Shewana3_0860 0.67 -0.4 1,002,518 - Shewana3_0860 0.75 -0.6 1,002,560 - Shewana3_0860 0.77 +0.9 1,002,767 + +0.4 1,002,879 + -0.2 1,002,881 - -0.4 1,002,887 - -0.2 1,003,086 + -0.4 1,003,127 - -0.2 1,003,274 + Shewana3_0861 0.20 -1.7 1,003,285 + Shewana3_0861 0.21 -0.6 1,003,337 - Shewana3_0861 0.27 -0.3 1,003,361 - Shewana3_0861 0.30 -0.2 1,003,449 + Shewana3_0861 0.40 -0.7 1,003,537 + Shewana3_0861 0.50 -1.1 1,003,537 + Shewana3_0861 0.50 -0.8 1,003,830 + Shewana3_0861 0.83 -0.2 1,004,454 - -0.6 1,004,480 - -1.6 1,004,533 + Shewana3_0862 0.15 -0.5 1,004,533 + Shewana3_0862 0.15 -0.4 1,004,577 + Shewana3_0862 0.20 -0.6 1,004,622 + Shewana3_0862 0.26 +0.1 1,004,622 + Shewana3_0862 0.26 -0.2 1,004,622 + Shewana3_0862 0.26 +0.2 1,004,630 - Shewana3_0862 0.26 -0.1 1,004,635 - Shewana3_0862 0.27 -0.2 1,004,827 + Shewana3_0862 0.50 +0.4 1,004,951 - Shewana3_0862 0.65 -1.5
Or see this region's nucleotide sequence