Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0842 and Shewana3_0843 are separated by 161 nucleotides Shewana3_0843 and Shewana3_0844 are separated by 96 nucleotides
Shewana3_0842: Shewana3_0842 - peptidase M16 domain-containing protein (RefSeq), at 975,240 to 976,655
_0842
Shewana3_0843: Shewana3_0843 - hypothetical protein (RefSeq), at 976,817 to 977,644
_0843
Shewana3_0844: Shewana3_0844 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 977,741 to 978,655
_0844
Position (kb) 976
977
978 Strain fitness (log2 ratio) -1
0
1 at 975.859 kb on - strand, within Shewana3_0842 at 975.898 kb on + strand, within Shewana3_0842 at 975.906 kb on - strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.908 kb on + strand, within Shewana3_0842 at 975.916 kb on - strand, within Shewana3_0842 at 975.983 kb on - strand, within Shewana3_0842 at 976.057 kb on - strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.096 kb on + strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.104 kb on - strand, within Shewana3_0842 at 976.222 kb on - strand, within Shewana3_0842 at 976.250 kb on + strand, within Shewana3_0842 at 976.257 kb on + strand, within Shewana3_0842 at 976.258 kb on - strand, within Shewana3_0842 at 976.265 kb on - strand, within Shewana3_0842 at 976.265 kb on - strand, within Shewana3_0842 at 976.269 kb on + strand, within Shewana3_0842 at 976.351 kb on + strand, within Shewana3_0842 at 976.458 kb on - strand, within Shewana3_0842 at 976.470 kb on + strand, within Shewana3_0842 at 976.487 kb on - strand, within Shewana3_0842 at 976.603 kb on + strand at 976.611 kb on - strand at 976.712 kb on + strand at 976.790 kb on + strand at 976.816 kb on - strand at 976.827 kb on - strand at 976.971 kb on + strand, within Shewana3_0843 at 977.001 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.059 kb on + strand, within Shewana3_0843 at 977.225 kb on + strand, within Shewana3_0843 at 977.330 kb on + strand, within Shewana3_0843 at 977.404 kb on - strand, within Shewana3_0843 at 977.518 kb on + strand, within Shewana3_0843 at 977.553 kb on + strand, within Shewana3_0843 at 977.731 kb on - strand at 977.774 kb on - strand at 977.808 kb on + strand at 977.857 kb on - strand, within Shewana3_0844 at 977.889 kb on - strand, within Shewana3_0844 at 977.906 kb on + strand, within Shewana3_0844 at 978.013 kb on - strand, within Shewana3_0844 at 978.038 kb on + strand, within Shewana3_0844 at 978.079 kb on - strand, within Shewana3_0844 at 978.090 kb on + strand, within Shewana3_0844 at 978.142 kb on - strand, within Shewana3_0844 at 978.241 kb on - strand, within Shewana3_0844 at 978.459 kb on - strand, within Shewana3_0844 at 978.517 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.529 kb on - strand, within Shewana3_0844 at 978.531 kb on + strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.539 kb on - strand, within Shewana3_0844 at 978.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 975,859 - Shewana3_0842 0.44 -0.2 975,898 + Shewana3_0842 0.46 +0.3 975,906 - Shewana3_0842 0.47 -0.3 975,908 + Shewana3_0842 0.47 -0.1 975,908 + Shewana3_0842 0.47 -0.1 975,916 - Shewana3_0842 0.48 -0.5 975,983 - Shewana3_0842 0.52 -1.0 976,057 - Shewana3_0842 0.58 +0.1 976,096 + Shewana3_0842 0.60 -1.0 976,096 + Shewana3_0842 0.60 +1.1 976,096 + Shewana3_0842 0.60 +0.8 976,096 + Shewana3_0842 0.60 +0.6 976,096 + Shewana3_0842 0.60 -0.3 976,096 + Shewana3_0842 0.60 -0.3 976,096 + Shewana3_0842 0.60 +0.4 976,104 - Shewana3_0842 0.61 +1.7 976,104 - Shewana3_0842 0.61 -0.7 976,104 - Shewana3_0842 0.61 -0.2 976,104 - Shewana3_0842 0.61 +1.4 976,222 - Shewana3_0842 0.69 -0.5 976,250 + Shewana3_0842 0.71 +0.3 976,257 + Shewana3_0842 0.72 -0.0 976,258 - Shewana3_0842 0.72 +0.8 976,265 - Shewana3_0842 0.72 -1.1 976,265 - Shewana3_0842 0.72 -0.1 976,269 + Shewana3_0842 0.73 -0.6 976,351 + Shewana3_0842 0.78 -0.2 976,458 - Shewana3_0842 0.86 -1.3 976,470 + Shewana3_0842 0.87 +1.2 976,487 - Shewana3_0842 0.88 +0.0 976,603 + +0.9 976,611 - +0.1 976,712 + -0.5 976,790 + -1.0 976,816 - -0.3 976,827 - -0.5 976,971 + Shewana3_0843 0.19 -1.0 977,001 + Shewana3_0843 0.22 -0.8 977,059 + Shewana3_0843 0.29 -0.8 977,059 + Shewana3_0843 0.29 -0.8 977,225 + Shewana3_0843 0.49 -0.9 977,330 + Shewana3_0843 0.62 -0.7 977,404 - Shewana3_0843 0.71 -0.9 977,518 + Shewana3_0843 0.85 -0.4 977,553 + Shewana3_0843 0.89 -0.9 977,731 - +0.1 977,774 - -0.3 977,808 + -1.1 977,857 - Shewana3_0844 0.13 +0.4 977,889 - Shewana3_0844 0.16 +0.2 977,906 + Shewana3_0844 0.18 -0.4 978,013 - Shewana3_0844 0.30 +0.6 978,038 + Shewana3_0844 0.32 -0.6 978,079 - Shewana3_0844 0.37 +0.5 978,090 + Shewana3_0844 0.38 -0.1 978,142 - Shewana3_0844 0.44 +0.2 978,241 - Shewana3_0844 0.55 +0.6 978,459 - Shewana3_0844 0.78 +0.3 978,517 - Shewana3_0844 0.85 -0.8 978,529 - Shewana3_0844 0.86 +0.3 978,529 - Shewana3_0844 0.86 -0.1 978,531 + Shewana3_0844 0.86 +0.1 978,539 - Shewana3_0844 0.87 +0.7 978,539 - Shewana3_0844 0.87 +0.8 978,604 + +0.7
Or see this region's nucleotide sequence