Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0817 and Shewana3_0818 are separated by 876 nucleotides Shewana3_0818 and Shewana3_0819 are separated by 434 nucleotides
Shewana3_0817: Shewana3_0817 - hypothetical protein (RefSeq), at 945,076 to 945,810
_0817
Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175
_0818
Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 947,610 to 950,804
_0819
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1 at 945.901 kb on - strand at 945.963 kb on - strand at 946.012 kb on + strand at 946.274 kb on + strand at 946.299 kb on + strand at 946.299 kb on + strand at 946.299 kb on + strand at 946.319 kb on + strand at 946.319 kb on + strand at 946.544 kb on - strand at 946.591 kb on + strand at 946.591 kb on + strand at 946.726 kb on - strand at 946.809 kb on - strand, within Shewana3_0818 at 946.877 kb on + strand, within Shewana3_0818 at 946.877 kb on - strand, within Shewana3_0818 at 946.959 kb on - strand, within Shewana3_0818 at 947.158 kb on - strand at 947.163 kb on + strand at 947.182 kb on - strand at 947.294 kb on - strand at 947.354 kb on + strand at 947.471 kb on + strand at 947.471 kb on + strand at 947.699 kb on + strand at 947.777 kb on - strand at 947.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 945,901 - -1.6 945,963 - -1.4 946,012 + +0.0 946,274 + +0.4 946,299 + -0.6 946,299 + -0.7 946,299 + +0.0 946,319 + -0.2 946,319 + -0.3 946,544 - -0.7 946,591 + +0.1 946,591 + +0.3 946,726 - -1.8 946,809 - Shewana3_0818 0.25 -0.9 946,877 + Shewana3_0818 0.39 +0.4 946,877 - Shewana3_0818 0.39 +0.2 946,959 - Shewana3_0818 0.56 +0.5 947,158 - -0.9 947,163 + -0.1 947,182 - -0.6 947,294 - +0.3 947,354 + -0.4 947,471 + +0.4 947,471 + +0.2 947,699 + -0.4 947,777 - +0.4 947,842 - +0.6
Or see this region's nucleotide sequence