Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0743 and Shewana3_0744 are separated by 202 nucleotides Shewana3_0744 and Shewana3_0745 are separated by 16 nucleotides Shewana3_0745 and Shewana3_0746 are separated by 157 nucleotides Shewana3_0746 and Shewana3_0747 are separated by 3 nucleotides
Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280
_0743
Shewana3_0744: Shewana3_0744 - ModE family transcriptional regulator (RefSeq), at 863,483 to 864,262
_0744
Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460
_0745
Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445
_0746
Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389
_0747
Position (kb)
864
865
866 Strain fitness (log2 ratio)
-1
0
1 at 863.467 kb on - strand at 863.737 kb on + strand, within Shewana3_0744 at 863.923 kb on - strand, within Shewana3_0744 at 863.924 kb on - strand, within Shewana3_0744 at 864.047 kb on + strand, within Shewana3_0744 at 864.110 kb on - strand, within Shewana3_0744 at 864.206 kb on - strand at 864.471 kb on + strand, within Shewana3_0745 at 864.477 kb on + strand, within Shewana3_0745 at 864.479 kb on - strand, within Shewana3_0745 at 864.786 kb on - strand, within Shewana3_0745 at 864.820 kb on - strand, within Shewana3_0745 at 864.951 kb on + strand, within Shewana3_0745 at 865.149 kb on + strand, within Shewana3_0745 at 865.157 kb on - strand, within Shewana3_0745 at 865.157 kb on - strand, within Shewana3_0745 at 865.392 kb on - strand at 865.510 kb on - strand at 865.530 kb on - strand at 865.629 kb on + strand at 865.655 kb on - strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.763 kb on - strand, within Shewana3_0746 at 865.780 kb on - strand, within Shewana3_0746 at 865.785 kb on - strand, within Shewana3_0746 at 865.813 kb on - strand, within Shewana3_0746 at 865.878 kb on + strand, within Shewana3_0746 at 865.886 kb on - strand, within Shewana3_0746 at 865.919 kb on - strand, within Shewana3_0746 at 866.325 kb on - strand, within Shewana3_0746
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 863,467 - +0.9 863,737 + Shewana3_0744 0.33 +0.5 863,923 - Shewana3_0744 0.56 -0.3 863,924 - Shewana3_0744 0.57 +0.4 864,047 + Shewana3_0744 0.72 -0.8 864,110 - Shewana3_0744 0.80 -1.0 864,206 - -0.1 864,471 + Shewana3_0745 0.16 -0.7 864,477 + Shewana3_0745 0.17 +0.2 864,479 - Shewana3_0745 0.17 -1.3 864,786 - Shewana3_0745 0.43 -0.8 864,820 - Shewana3_0745 0.46 -0.6 864,951 + Shewana3_0745 0.57 +0.1 865,149 + Shewana3_0745 0.74 -0.2 865,157 - Shewana3_0745 0.74 -0.5 865,157 - Shewana3_0745 0.74 -1.2 865,392 - -1.5 865,510 - -0.8 865,530 - -0.1 865,629 + +0.3 865,655 - +0.1 865,672 + -0.5 865,672 + +0.3 865,672 + +0.4 865,763 - Shewana3_0746 0.18 -0.3 865,780 - Shewana3_0746 0.20 -0.7 865,785 - Shewana3_0746 0.20 +0.4 865,813 - Shewana3_0746 0.24 +0.7 865,878 + Shewana3_0746 0.31 -0.5 865,886 - Shewana3_0746 0.32 -0.5 865,919 - Shewana3_0746 0.36 -0.6 866,325 - Shewana3_0746 0.85 -1.4
Or see this region's nucleotide sequence