Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0600 and Shewana3_0601 are separated by 368 nucleotides Shewana3_0601 and Shewana3_0602 overlap by 1 nucleotides Shewana3_0602 and Shewana3_0603 overlap by 1 nucleotides Shewana3_0603 and sspA are separated by 96 nucleotides
Shewana3_0600: Shewana3_0600 - HflC protein (RefSeq), at 703,661 to 704,554
_0600
Shewana3_0601: Shewana3_0601 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq), at 704,923 to 705,513
_0601
Shewana3_0602: Shewana3_0602 - cytochrome b/b6 domain-containing protein (RefSeq), at 705,513 to 706,727
_0602
Shewana3_0603: Shewana3_0603 - cytochrome c1 (RefSeq), at 706,727 to 707,425
_0603
Shewana3_0604: sspA - stringent starvation protein A (RefSeq), at 707,522 to 708,151
sspA
Position (kb) 705
706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 704.829 kb on - strand at 705.718 kb on + strand, within Shewana3_0602 at 705.723 kb on + strand, within Shewana3_0602 at 706.009 kb on + strand, within Shewana3_0602 at 706.099 kb on - strand, within Shewana3_0602 at 706.396 kb on - strand, within Shewana3_0602 at 706.489 kb on + strand, within Shewana3_0602 at 706.594 kb on + strand, within Shewana3_0602 at 707.094 kb on + strand, within Shewana3_0603 at 707.202 kb on + strand, within Shewana3_0603 at 707.414 kb on + strand at 707.506 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 704,829 - -3.1 705,718 + Shewana3_0602 0.17 -2.7 705,723 + Shewana3_0602 0.17 -3.2 706,009 + Shewana3_0602 0.41 -2.4 706,099 - Shewana3_0602 0.48 -0.3 706,396 - Shewana3_0602 0.73 +1.7 706,489 + Shewana3_0602 0.80 -3.3 706,594 + Shewana3_0602 0.89 -2.3 707,094 + Shewana3_0603 0.53 -2.9 707,202 + Shewana3_0603 0.68 -3.6 707,414 + +0.1 707,506 + -0.3
Or see this region's nucleotide sequence