Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemE and Shewana3_0436 are separated by 377 nucleotides Shewana3_0436 and Shewana3_0437 are separated by 75 nucleotides Shewana3_0437 and Shewana3_0438 are separated by 3 nucleotides
Shewana3_0435: hemE - uroporphyrinogen decarboxylase (RefSeq), at 505,704 to 506,768
hemE
Shewana3_0436: Shewana3_0436 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 507,146 to 509,716
_0436
Shewana3_0437: Shewana3_0437 - short chain dehydrogenase (RefSeq), at 509,792 to 510,595
_0437
Shewana3_0438: Shewana3_0438 - hypothetical protein (RefSeq), at 510,599 to 510,823
_0438
Position (kb)
507
508
509
510 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 506.857 kb on - strand at 507.099 kb on - strand at 507.101 kb on + strand at 507.101 kb on + strand at 507.109 kb on - strand at 507.141 kb on - strand at 507.243 kb on + strand at 507.301 kb on + strand at 507.495 kb on + strand, within Shewana3_0436 at 507.631 kb on - strand, within Shewana3_0436 at 507.644 kb on + strand, within Shewana3_0436 at 507.846 kb on + strand, within Shewana3_0436 at 507.893 kb on - strand, within Shewana3_0436 at 507.996 kb on - strand, within Shewana3_0436 at 508.107 kb on - strand, within Shewana3_0436 at 508.150 kb on + strand, within Shewana3_0436 at 508.189 kb on + strand, within Shewana3_0436 at 508.192 kb on - strand, within Shewana3_0436 at 508.192 kb on - strand, within Shewana3_0436 at 508.259 kb on - strand, within Shewana3_0436 at 508.310 kb on - strand, within Shewana3_0436 at 508.615 kb on + strand, within Shewana3_0436 at 508.768 kb on + strand, within Shewana3_0436 at 508.819 kb on - strand, within Shewana3_0436 at 508.842 kb on - strand, within Shewana3_0436 at 508.842 kb on - strand, within Shewana3_0436 at 508.847 kb on + strand, within Shewana3_0436 at 508.912 kb on - strand, within Shewana3_0436 at 509.101 kb on - strand, within Shewana3_0436 at 509.118 kb on + strand, within Shewana3_0436 at 509.118 kb on + strand, within Shewana3_0436 at 509.520 kb on - strand at 509.524 kb on + strand at 509.633 kb on + strand at 509.638 kb on + strand at 509.849 kb on - strand at 509.991 kb on - strand, within Shewana3_0437 at 510.005 kb on + strand, within Shewana3_0437 at 510.039 kb on + strand, within Shewana3_0437 at 510.167 kb on + strand, within Shewana3_0437 at 510.175 kb on - strand, within Shewana3_0437 at 510.185 kb on - strand, within Shewana3_0437 at 510.202 kb on - strand, within Shewana3_0437 at 510.234 kb on - strand, within Shewana3_0437 at 510.399 kb on - strand, within Shewana3_0437 at 510.637 kb on - strand, within Shewana3_0438
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 506,857 - +0.1 507,099 - +0.7 507,101 + -3.2 507,101 + -0.9 507,109 - -0.8 507,141 - -0.7 507,243 + -1.7 507,301 + -0.2 507,495 + Shewana3_0436 0.14 +0.0 507,631 - Shewana3_0436 0.19 -0.6 507,644 + Shewana3_0436 0.19 +0.0 507,846 + Shewana3_0436 0.27 +0.4 507,893 - Shewana3_0436 0.29 -0.4 507,996 - Shewana3_0436 0.33 -1.7 508,107 - Shewana3_0436 0.37 -1.4 508,150 + Shewana3_0436 0.39 +0.5 508,189 + Shewana3_0436 0.41 +0.3 508,192 - Shewana3_0436 0.41 +1.0 508,192 - Shewana3_0436 0.41 -0.5 508,259 - Shewana3_0436 0.43 +0.6 508,310 - Shewana3_0436 0.45 -0.2 508,615 + Shewana3_0436 0.57 +0.7 508,768 + Shewana3_0436 0.63 +0.5 508,819 - Shewana3_0436 0.65 -1.5 508,842 - Shewana3_0436 0.66 +1.1 508,842 - Shewana3_0436 0.66 +0.0 508,847 + Shewana3_0436 0.66 +1.0 508,912 - Shewana3_0436 0.69 -2.4 509,101 - Shewana3_0436 0.76 -0.2 509,118 + Shewana3_0436 0.77 -0.3 509,118 + Shewana3_0436 0.77 -0.7 509,520 - -1.3 509,524 + -0.3 509,633 + +0.2 509,638 + -0.1 509,849 - +1.6 509,991 - Shewana3_0437 0.25 -2.1 510,005 + Shewana3_0437 0.26 +0.5 510,039 + Shewana3_0437 0.31 +0.1 510,167 + Shewana3_0437 0.47 +1.1 510,175 - Shewana3_0437 0.48 +1.5 510,185 - Shewana3_0437 0.49 -3.0 510,202 - Shewana3_0437 0.51 -0.2 510,234 - Shewana3_0437 0.55 -0.7 510,399 - Shewana3_0437 0.75 +0.3 510,637 - Shewana3_0438 0.17 +0.1
Or see this region's nucleotide sequence