Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0366

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0365 and Shewana3_0366 are separated by 162 nucleotidesShewana3_0366 and Shewana3_0367 are separated by 236 nucleotides Shewana3_0365: Shewana3_0365 - hypothetical protein (RefSeq), at 401,643 to 403,118 _0365 Shewana3_0366: Shewana3_0366 - hypothetical protein (RefSeq), at 403,281 to 403,808 _0366 Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211 _0367 Position (kb) 403 404Strain fitness (log2 ratio) -2 -1 0 1at 402.316 kb on - strand, within Shewana3_0365at 402.377 kb on + strand, within Shewana3_0365at 402.598 kb on + strand, within Shewana3_0365at 402.777 kb on + strand, within Shewana3_0365at 402.925 kb on + strand, within Shewana3_0365at 402.933 kb on + strand, within Shewana3_0365at 402.979 kb on + strandat 403.089 kb on + strandat 403.359 kb on - strand, within Shewana3_0366at 403.394 kb on + strand, within Shewana3_0366at 403.541 kb on + strand, within Shewana3_0366at 403.572 kb on - strand, within Shewana3_0366at 403.683 kb on + strand, within Shewana3_0366at 403.717 kb on + strand, within Shewana3_0366at 403.842 kb on - strandat 403.875 kb on + strandat 403.877 kb on - strandat 404.107 kb on - strandat 404.108 kb on - strandat 404.249 kb on - strand, within Shewana3_0367at 404.385 kb on - strand, within Shewana3_0367at 404.714 kb on - strand, within Shewana3_0367

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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402,316 - Shewana3_0365 0.46 -1.8
402,377 + Shewana3_0365 0.50 -0.1
402,598 + Shewana3_0365 0.65 +0.4
402,777 + Shewana3_0365 0.77 -0.5
402,925 + Shewana3_0365 0.87 -0.8
402,933 + Shewana3_0365 0.87 -0.4
402,979 + -0.2
403,089 + +0.3
403,359 - Shewana3_0366 0.15 -0.1
403,394 + Shewana3_0366 0.21 +0.2
403,541 + Shewana3_0366 0.49 +0.1
403,572 - Shewana3_0366 0.55 -1.7
403,683 + Shewana3_0366 0.76 +0.1
403,717 + Shewana3_0366 0.83 +0.9
403,842 - -1.0
403,875 + -1.0
403,877 - -0.3
404,107 - -0.6
404,108 - -0.1
404,249 - Shewana3_0367 0.17 +0.1
404,385 - Shewana3_0367 0.29 -0.3
404,714 - Shewana3_0367 0.57 -0.3

Or see this region's nucleotide sequence