Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0348

Experiment: 2-Furfuraldehyde 0.125 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0347 and Shewana3_0348 are separated by 178 nucleotidesShewana3_0348 and Shewana3_0349 are separated by 387 nucleotides Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595 _0347 Shewana3_0348: Shewana3_0348 - ATP-dependent DNA helicase RecG (RefSeq), at 380,774 to 382,864 _0348 Shewana3_0349: Shewana3_0349 - periplasmic sugar-binding protein, putative (RefSeq), at 383,252 to 384,298 _0349 Position (kb) 380 381 382 383Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 379.792 kb on + strand, within Shewana3_0347at 379.800 kb on - strand, within Shewana3_0347at 379.806 kb on - strand, within Shewana3_0347at 379.848 kb on + strand, within Shewana3_0347at 379.854 kb on - strand, within Shewana3_0347at 379.856 kb on - strand, within Shewana3_0347at 379.875 kb on - strand, within Shewana3_0347at 379.935 kb on - strand, within Shewana3_0347at 379.936 kb on - strand, within Shewana3_0347at 379.974 kb on + strand, within Shewana3_0347at 379.974 kb on + strand, within Shewana3_0347at 379.982 kb on - strand, within Shewana3_0347at 379.982 kb on - strand, within Shewana3_0347at 379.982 kb on - strand, within Shewana3_0347at 379.982 kb on - strand, within Shewana3_0347at 379.982 kb on - strand, within Shewana3_0347at 379.982 kb on - strand, within Shewana3_0347at 379.986 kb on + strand, within Shewana3_0347at 379.993 kb on + strand, within Shewana3_0347at 379.993 kb on + strand, within Shewana3_0347at 379.994 kb on - strand, within Shewana3_0347at 379.994 kb on - strand, within Shewana3_0347at 380.135 kb on + strand, within Shewana3_0347at 380.255 kb on - strand, within Shewana3_0347at 380.271 kb on + strand, within Shewana3_0347at 380.351 kb on - strand, within Shewana3_0347at 380.419 kb on - strand, within Shewana3_0347at 380.637 kb on - strandat 380.670 kb on - strandat 380.701 kb on - strandat 380.712 kb on + strandat 380.767 kb on - strandat 380.938 kb on + strandat 380.945 kb on + strandat 381.030 kb on - strand, within Shewana3_0348at 381.083 kb on - strand, within Shewana3_0348at 381.108 kb on - strand, within Shewana3_0348at 381.210 kb on - strand, within Shewana3_0348at 381.234 kb on + strand, within Shewana3_0348at 381.646 kb on + strand, within Shewana3_0348at 381.654 kb on - strand, within Shewana3_0348at 381.654 kb on - strand, within Shewana3_0348at 381.659 kb on - strand, within Shewana3_0348at 381.793 kb on - strand, within Shewana3_0348at 381.794 kb on - strand, within Shewana3_0348at 381.888 kb on + strand, within Shewana3_0348at 381.968 kb on + strand, within Shewana3_0348at 381.976 kb on - strand, within Shewana3_0348at 381.976 kb on - strand, within Shewana3_0348at 382.106 kb on + strand, within Shewana3_0348at 382.135 kb on + strand, within Shewana3_0348at 382.143 kb on - strand, within Shewana3_0348at 382.143 kb on - strand, within Shewana3_0348at 382.156 kb on + strand, within Shewana3_0348at 382.156 kb on + strand, within Shewana3_0348at 382.171 kb on + strand, within Shewana3_0348at 382.174 kb on - strand, within Shewana3_0348at 382.305 kb on + strand, within Shewana3_0348at 382.360 kb on + strand, within Shewana3_0348at 382.360 kb on + strand, within Shewana3_0348at 382.360 kb on + strand, within Shewana3_0348at 382.368 kb on - strand, within Shewana3_0348at 382.368 kb on - strand, within Shewana3_0348at 382.547 kb on - strand, within Shewana3_0348at 382.547 kb on - strand, within Shewana3_0348at 382.547 kb on - strand, within Shewana3_0348at 382.578 kb on - strand, within Shewana3_0348at 382.579 kb on - strand, within Shewana3_0348at 382.590 kb on + strand, within Shewana3_0348at 382.590 kb on + strand, within Shewana3_0348at 382.613 kb on - strand, within Shewana3_0348at 382.613 kb on - strand, within Shewana3_0348at 382.645 kb on - strand, within Shewana3_0348at 382.678 kb on - strandat 382.722 kb on + strandat 382.727 kb on + strandat 382.735 kb on - strandat 382.735 kb on - strandat 382.751 kb on + strandat 382.751 kb on + strandat 382.868 kb on + strandat 382.893 kb on + strandat 382.901 kb on + strandat 382.901 kb on + strandat 382.901 kb on - strandat 382.901 kb on - strandat 382.903 kb on - strandat 382.903 kb on - strandat 382.903 kb on - strandat 382.916 kb on + strandat 382.919 kb on - strandat 382.921 kb on + strandat 382.940 kb on + strandat 382.940 kb on + strandat 382.947 kb on - strandat 382.947 kb on - strandat 382.949 kb on + strandat 382.995 kb on - strandat 382.998 kb on + strandat 383.115 kb on + strandat 383.115 kb on + strandat 383.196 kb on + strandat 383.196 kb on + strandat 383.196 kb on + strandat 383.204 kb on - strandat 383.204 kb on - strandat 383.204 kb on - strandat 383.220 kb on + strandat 383.239 kb on + strandat 383.239 kb on + strandat 383.242 kb on - strandat 383.242 kb on - strandat 383.242 kb on - strandat 383.242 kb on - strandat 383.242 kb on - strandat 383.263 kb on + strandat 383.263 kb on + strandat 383.271 kb on - strandat 383.271 kb on - strandat 383.284 kb on + strandat 383.335 kb on + strandat 383.383 kb on + strand, within Shewana3_0349at 383.383 kb on + strand, within Shewana3_0349at 383.391 kb on - strand, within Shewana3_0349at 383.406 kb on - strand, within Shewana3_0349at 383.580 kb on + strand, within Shewana3_0349at 383.587 kb on - strand, within Shewana3_0349at 383.587 kb on - strand, within Shewana3_0349at 383.605 kb on + strand, within Shewana3_0349at 383.701 kb on - strand, within Shewana3_0349at 383.741 kb on + strand, within Shewana3_0349at 383.749 kb on - strand, within Shewana3_0349at 383.788 kb on + strand, within Shewana3_0349at 383.796 kb on - strand, within Shewana3_0349at 383.799 kb on + strand, within Shewana3_0349at 383.807 kb on - strand, within Shewana3_0349at 383.807 kb on - strand, within Shewana3_0349at 383.844 kb on + strand, within Shewana3_0349

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol%
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379,792 + Shewana3_0347 0.10 -0.0
379,800 - Shewana3_0347 0.11 -0.1
379,806 - Shewana3_0347 0.12 +0.1
379,848 + Shewana3_0347 0.17 -0.6
379,854 - Shewana3_0347 0.17 +0.1
379,856 - Shewana3_0347 0.18 +0.2
379,875 - Shewana3_0347 0.20 -0.2
379,935 - Shewana3_0347 0.26 -0.2
379,936 - Shewana3_0347 0.26 -0.1
379,974 + Shewana3_0347 0.31 -0.2
379,974 + Shewana3_0347 0.31 -0.6
379,982 - Shewana3_0347 0.32 -0.2
379,982 - Shewana3_0347 0.32 -0.6
379,982 - Shewana3_0347 0.32 -0.5
379,982 - Shewana3_0347 0.32 +0.1
379,982 - Shewana3_0347 0.32 +0.5
379,982 - Shewana3_0347 0.32 +0.1
379,986 + Shewana3_0347 0.32 -0.9
379,993 + Shewana3_0347 0.33 +0.5
379,993 + Shewana3_0347 0.33 -0.2
379,994 - Shewana3_0347 0.33 +0.1
379,994 - Shewana3_0347 0.33 +0.1
380,135 + Shewana3_0347 0.49 -1.1
380,255 - Shewana3_0347 0.62 -2.7
380,271 + Shewana3_0347 0.64 +0.4
380,351 - Shewana3_0347 0.73 -1.7
380,419 - Shewana3_0347 0.80 -0.3
380,637 - -0.7
380,670 - -0.0
380,701 - -0.5
380,712 + +0.5
380,767 - -0.6
380,938 + -2.6
380,945 + -2.0
381,030 - Shewana3_0348 0.12 -0.0
381,083 - Shewana3_0348 0.15 -3.1
381,108 - Shewana3_0348 0.16 -2.9
381,210 - Shewana3_0348 0.21 -2.7
381,234 + Shewana3_0348 0.22 -2.8
381,646 + Shewana3_0348 0.42 -3.3
381,654 - Shewana3_0348 0.42 -3.7
381,654 - Shewana3_0348 0.42 -2.4
381,659 - Shewana3_0348 0.42 -3.3
381,793 - Shewana3_0348 0.49 -1.2
381,794 - Shewana3_0348 0.49 -1.8
381,888 + Shewana3_0348 0.53 -2.6
381,968 + Shewana3_0348 0.57 -4.5
381,976 - Shewana3_0348 0.57 -1.6
381,976 - Shewana3_0348 0.57 -3.6
382,106 + Shewana3_0348 0.64 -3.3
382,135 + Shewana3_0348 0.65 -4.1
382,143 - Shewana3_0348 0.65 -1.5
382,143 - Shewana3_0348 0.65 -2.5
382,156 + Shewana3_0348 0.66 -3.4
382,156 + Shewana3_0348 0.66 -3.4
382,171 + Shewana3_0348 0.67 -3.7
382,174 - Shewana3_0348 0.67 -0.1
382,305 + Shewana3_0348 0.73 -3.5
382,360 + Shewana3_0348 0.76 -2.8
382,360 + Shewana3_0348 0.76 -3.8
382,360 + Shewana3_0348 0.76 -1.0
382,368 - Shewana3_0348 0.76 -3.1
382,368 - Shewana3_0348 0.76 -2.7
382,547 - Shewana3_0348 0.85 -3.8
382,547 - Shewana3_0348 0.85 -1.6
382,547 - Shewana3_0348 0.85 -2.7
382,578 - Shewana3_0348 0.86 -2.6
382,579 - Shewana3_0348 0.86 -2.8
382,590 + Shewana3_0348 0.87 -3.3
382,590 + Shewana3_0348 0.87 -2.2
382,613 - Shewana3_0348 0.88 -3.1
382,613 - Shewana3_0348 0.88 -3.4
382,645 - Shewana3_0348 0.89 -1.2
382,678 - -3.4
382,722 + -2.1
382,727 + -2.6
382,735 - -3.0
382,735 - +0.7
382,751 + -2.6
382,751 + -2.6
382,868 + -1.8
382,893 + +0.3
382,901 + -2.1
382,901 + -1.3
382,901 - +0.7
382,901 - -0.1
382,903 - +0.2
382,903 - +0.6
382,903 - +0.1
382,916 + -0.1
382,919 - -0.8
382,921 + +0.0
382,940 + +0.3
382,940 + -0.2
382,947 - -0.4
382,947 - -0.7
382,949 + +0.1
382,995 - +0.2
382,998 + -1.6
383,115 + -1.9
383,115 + -1.9
383,196 + +0.2
383,196 + -0.6
383,196 + -0.7
383,204 - -0.9
383,204 - +0.7
383,204 - -1.9
383,220 + +0.3
383,239 + -0.0
383,239 + -0.6
383,242 - -1.4
383,242 - +0.4
383,242 - -0.3
383,242 - +0.0
383,242 - -0.6
383,263 + -0.7
383,263 + -0.5
383,271 - -0.9
383,271 - +0.2
383,284 + -0.2
383,335 + -0.6
383,383 + Shewana3_0349 0.13 -0.2
383,383 + Shewana3_0349 0.13 -0.1
383,391 - Shewana3_0349 0.13 +0.7
383,406 - Shewana3_0349 0.15 -0.9
383,580 + Shewana3_0349 0.31 -1.0
383,587 - Shewana3_0349 0.32 -2.4
383,587 - Shewana3_0349 0.32 -0.3
383,605 + Shewana3_0349 0.34 -0.2
383,701 - Shewana3_0349 0.43 -0.5
383,741 + Shewana3_0349 0.47 +0.4
383,749 - Shewana3_0349 0.47 +1.0
383,788 + Shewana3_0349 0.51 -0.0
383,796 - Shewana3_0349 0.52 -0.4
383,799 + Shewana3_0349 0.52 +0.1
383,807 - Shewana3_0349 0.53 -0.4
383,807 - Shewana3_0349 0.53 +0.4
383,844 + Shewana3_0349 0.57 -0.1

Or see this region's nucleotide sequence