Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0344 and Shewana3_0345 overlap by 14 nucleotides Shewana3_0345 and Shewana3_0346 overlap by 8 nucleotides Shewana3_0346 and Shewana3_0347 are separated by 384 nucleotides
Shewana3_0344: Shewana3_0344 - acyl carrier protein, putative (RefSeq), at 377,498 to 377,752
_0344
Shewana3_0345: Shewana3_0345 - phospholipid/glycerol acyltransferase (RefSeq), at 377,739 to 378,587
_0345
Shewana3_0346: Shewana3_0346 - hypothetical protein (RefSeq), at 378,580 to 379,314
_0346
Shewana3_0347: Shewana3_0347 - hypothetical protein (RefSeq), at 379,699 to 380,595
_0347
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1 at 377.635 kb on + strand, within Shewana3_0344 at 377.683 kb on + strand, within Shewana3_0344 at 378.078 kb on + strand, within Shewana3_0345 at 378.086 kb on - strand, within Shewana3_0345 at 378.113 kb on - strand, within Shewana3_0345 at 378.193 kb on - strand, within Shewana3_0345 at 378.295 kb on + strand, within Shewana3_0345 at 378.350 kb on - strand, within Shewana3_0345 at 378.390 kb on - strand, within Shewana3_0345 at 378.410 kb on + strand, within Shewana3_0345 at 378.539 kb on + strand at 378.547 kb on - strand at 378.567 kb on + strand at 378.624 kb on + strand at 378.675 kb on - strand, within Shewana3_0346 at 378.698 kb on + strand, within Shewana3_0346 at 378.728 kb on - strand, within Shewana3_0346 at 378.774 kb on - strand, within Shewana3_0346 at 379.038 kb on + strand, within Shewana3_0346 at 379.046 kb on - strand, within Shewana3_0346 at 379.090 kb on + strand, within Shewana3_0346 at 379.169 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.190 kb on - strand, within Shewana3_0346 at 379.332 kb on + strand at 379.340 kb on - strand at 379.418 kb on - strand at 379.467 kb on + strand at 379.583 kb on + strand at 379.619 kb on + strand at 379.792 kb on + strand, within Shewana3_0347 at 379.800 kb on - strand, within Shewana3_0347 at 379.806 kb on - strand, within Shewana3_0347 at 379.848 kb on + strand, within Shewana3_0347 at 379.854 kb on - strand, within Shewana3_0347 at 379.856 kb on - strand, within Shewana3_0347 at 379.875 kb on - strand, within Shewana3_0347 at 379.935 kb on - strand, within Shewana3_0347 at 379.936 kb on - strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.974 kb on + strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.982 kb on - strand, within Shewana3_0347 at 379.986 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.993 kb on + strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 379.994 kb on - strand, within Shewana3_0347 at 380.135 kb on + strand, within Shewana3_0347 at 380.255 kb on - strand, within Shewana3_0347 at 380.271 kb on + strand, within Shewana3_0347
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 377,635 + Shewana3_0344 0.54 +0.4 377,683 + Shewana3_0344 0.73 -1.9 378,078 + Shewana3_0345 0.40 -0.1 378,086 - Shewana3_0345 0.41 -0.0 378,113 - Shewana3_0345 0.44 -0.5 378,193 - Shewana3_0345 0.53 +0.1 378,295 + Shewana3_0345 0.65 -0.6 378,350 - Shewana3_0345 0.72 -0.2 378,390 - Shewana3_0345 0.77 -1.4 378,410 + Shewana3_0345 0.79 -0.1 378,539 + -0.0 378,547 - -0.4 378,567 + -0.7 378,624 + -0.1 378,675 - Shewana3_0346 0.13 -0.8 378,698 + Shewana3_0346 0.16 -0.6 378,728 - Shewana3_0346 0.20 -0.5 378,774 - Shewana3_0346 0.26 -0.5 379,038 + Shewana3_0346 0.62 -0.0 379,046 - Shewana3_0346 0.63 -0.1 379,090 + Shewana3_0346 0.69 -0.2 379,169 - Shewana3_0346 0.80 -0.3 379,190 - Shewana3_0346 0.83 -0.1 379,190 - Shewana3_0346 0.83 -0.1 379,332 + -0.6 379,340 - -0.7 379,418 - +0.1 379,467 + -0.2 379,583 + -1.7 379,619 + +0.3 379,792 + Shewana3_0347 0.10 -0.0 379,800 - Shewana3_0347 0.11 -0.1 379,806 - Shewana3_0347 0.12 +0.1 379,848 + Shewana3_0347 0.17 -0.6 379,854 - Shewana3_0347 0.17 +0.1 379,856 - Shewana3_0347 0.18 +0.2 379,875 - Shewana3_0347 0.20 -0.2 379,935 - Shewana3_0347 0.26 -0.2 379,936 - Shewana3_0347 0.26 -0.1 379,974 + Shewana3_0347 0.31 -0.2 379,974 + Shewana3_0347 0.31 -0.6 379,982 - Shewana3_0347 0.32 -0.2 379,982 - Shewana3_0347 0.32 -0.6 379,982 - Shewana3_0347 0.32 -0.5 379,982 - Shewana3_0347 0.32 +0.1 379,982 - Shewana3_0347 0.32 +0.5 379,982 - Shewana3_0347 0.32 +0.1 379,986 + Shewana3_0347 0.32 -0.9 379,993 + Shewana3_0347 0.33 +0.5 379,993 + Shewana3_0347 0.33 -0.2 379,994 - Shewana3_0347 0.33 +0.1 379,994 - Shewana3_0347 0.33 +0.1 380,135 + Shewana3_0347 0.49 -1.1 380,255 - Shewana3_0347 0.62 -2.7 380,271 + Shewana3_0347 0.64 +0.4
Or see this region's nucleotide sequence