Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0259 and Shewana3_0260 are separated by 121 nucleotides Shewana3_0260 and Shewana3_0261 are separated by 274 nucleotides Shewana3_0261 and Shewana3_0262 are separated by 149 nucleotides Shewana3_0262 and Shewana3_0263 are separated by 116 nucleotides
Shewana3_0259: Shewana3_0259 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 290,484 to 291,530
_0259
Shewana3_0260: Shewana3_0260 - hypothetical protein (RefSeq), at 291,652 to 292,185
_0260
Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617
_0261
Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363
_0262
Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791
_0263
Position (kb) 292
293
294 Strain fitness (log2 ratio) -2
-1
0
1 at 291.557 kb on + strand at 291.557 kb on + strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.778 kb on - strand, within Shewana3_0260 at 291.801 kb on + strand, within Shewana3_0260 at 291.822 kb on - strand, within Shewana3_0260 at 291.926 kb on + strand, within Shewana3_0260 at 292.082 kb on - strand, within Shewana3_0260 at 292.173 kb on - strand at 292.178 kb on - strand at 292.281 kb on - strand at 292.381 kb on - strand at 292.414 kb on - strand at 292.540 kb on + strand at 292.570 kb on - strand at 292.687 kb on + strand, within Shewana3_0261 at 292.687 kb on + strand, within Shewana3_0261 at 292.740 kb on - strand, within Shewana3_0261 at 292.766 kb on + strand, within Shewana3_0261 at 292.786 kb on - strand, within Shewana3_0261 at 292.807 kb on + strand, within Shewana3_0261 at 292.808 kb on - strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.843 kb on - strand, within Shewana3_0261 at 292.849 kb on - strand, within Shewana3_0261 at 292.907 kb on + strand, within Shewana3_0261 at 292.922 kb on + strand, within Shewana3_0261 at 292.977 kb on + strand, within Shewana3_0261 at 292.985 kb on - strand, within Shewana3_0261 at 292.990 kb on - strand, within Shewana3_0261 at 292.993 kb on - strand, within Shewana3_0261 at 293.084 kb on + strand, within Shewana3_0261 at 293.210 kb on + strand, within Shewana3_0261 at 293.210 kb on + strand, within Shewana3_0261 at 293.408 kb on + strand, within Shewana3_0261 at 293.539 kb on + strand at 293.539 kb on + strand at 293.628 kb on + strand at 293.805 kb on + strand at 293.805 kb on + strand at 293.813 kb on - strand at 293.972 kb on - strand, within Shewana3_0262 at 294.005 kb on + strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.130 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.191 kb on - strand, within Shewana3_0262 at 294.279 kb on - strand, within Shewana3_0262
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 291,557 + +0.3 291,557 + +0.1 291,606 + +0.3 291,606 + +0.2 291,778 - Shewana3_0260 0.24 -0.9 291,801 + Shewana3_0260 0.28 -0.1 291,822 - Shewana3_0260 0.32 -2.2 291,926 + Shewana3_0260 0.51 +0.2 292,082 - Shewana3_0260 0.81 -1.3 292,173 - -1.1 292,178 - -1.2 292,281 - -0.3 292,381 - -0.3 292,414 - -1.1 292,540 + +0.3 292,570 - +0.7 292,687 + Shewana3_0261 0.20 -0.5 292,687 + Shewana3_0261 0.20 +0.6 292,740 - Shewana3_0261 0.24 -0.2 292,766 + Shewana3_0261 0.26 +0.2 292,786 - Shewana3_0261 0.28 +0.4 292,807 + Shewana3_0261 0.30 +0.2 292,808 - Shewana3_0261 0.30 +0.3 292,835 + Shewana3_0261 0.32 +0.5 292,835 + Shewana3_0261 0.32 -0.0 292,835 + Shewana3_0261 0.32 +0.8 292,835 + Shewana3_0261 0.32 -0.4 292,843 - Shewana3_0261 0.33 +0.1 292,849 - Shewana3_0261 0.34 +0.4 292,907 + Shewana3_0261 0.39 -0.6 292,922 + Shewana3_0261 0.40 +0.8 292,977 + Shewana3_0261 0.45 +0.2 292,985 - Shewana3_0261 0.45 +0.3 292,990 - Shewana3_0261 0.46 +0.6 292,993 - Shewana3_0261 0.46 -0.1 293,084 + Shewana3_0261 0.54 -1.1 293,210 + Shewana3_0261 0.65 -0.0 293,210 + Shewana3_0261 0.65 -0.0 293,408 + Shewana3_0261 0.82 -0.7 293,539 + +0.1 293,539 + +0.2 293,628 + +0.8 293,805 + -0.0 293,805 + -0.6 293,813 - +0.1 293,972 - Shewana3_0262 0.34 +0.2 294,005 + Shewana3_0262 0.40 +0.4 294,070 - Shewana3_0262 0.51 +0.8 294,070 - Shewana3_0262 0.51 +0.7 294,130 - Shewana3_0262 0.61 +0.4 294,169 - Shewana3_0262 0.67 +0.7 294,169 - Shewana3_0262 0.67 -1.1 294,191 - Shewana3_0262 0.71 +0.7 294,279 - Shewana3_0262 0.86 +0.2
Or see this region's nucleotide sequence