Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0229 and Shewana3_0230 are separated by 1 nucleotides Shewana3_0230 and Shewana3_0231 are separated by 11 nucleotides Shewana3_0231 and Shewana3_0232 are separated by 325 nucleotides Shewana3_0232 and Shewana3_0233 are separated by 83 nucleotides
Shewana3_0229: Shewana3_0229 - heme exporter protein CcmC (RefSeq), at 258,783 to 259,529
_0229
Shewana3_0230: Shewana3_0230 - heme exporter protein CcmB (RefSeq), at 259,531 to 260,217
_0230
Shewana3_0231: Shewana3_0231 - cytochrome c biogenesis protein CcmA (RefSeq), at 260,229 to 260,879
_0231
Shewana3_0232: Shewana3_0232 - cytochrome c, class I (RefSeq), at 261,205 to 261,504
_0232
Shewana3_0233: Shewana3_0233 - TPR repeat-containing protein (RefSeq), at 261,588 to 262,835
_0233
Position (kb) 260
261 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 259.512 kb on - strand at 259.572 kb on + strand at 259.734 kb on + strand, within Shewana3_0230 at 259.742 kb on + strand, within Shewana3_0230 at 259.789 kb on - strand, within Shewana3_0230 at 259.799 kb on + strand, within Shewana3_0230 at 259.932 kb on + strand, within Shewana3_0230 at 259.937 kb on + strand, within Shewana3_0230 at 259.940 kb on - strand, within Shewana3_0230 at 260.172 kb on + strand at 260.201 kb on - strand at 260.226 kb on + strand at 260.234 kb on - strand at 260.307 kb on - strand, within Shewana3_0231 at 260.451 kb on + strand, within Shewana3_0231 at 260.537 kb on + strand, within Shewana3_0231 at 260.593 kb on + strand, within Shewana3_0231 at 260.696 kb on + strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.697 kb on - strand, within Shewana3_0231 at 260.700 kb on + strand, within Shewana3_0231 at 260.704 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.708 kb on - strand, within Shewana3_0231 at 260.835 kb on - strand at 260.846 kb on + strand at 260.955 kb on - strand at 260.955 kb on - strand at 260.993 kb on + strand at 261.129 kb on + strand at 261.130 kb on + strand at 261.147 kb on - strand at 261.246 kb on - strand, within Shewana3_0232 at 261.302 kb on + strand, within Shewana3_0232 at 261.302 kb on - strand, within Shewana3_0232 at 261.302 kb on - strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.391 kb on + strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.399 kb on - strand, within Shewana3_0232 at 261.401 kb on + strand, within Shewana3_0232 at 261.401 kb on + strand, within Shewana3_0232 at 261.548 kb on - strand at 261.565 kb on + strand at 261.573 kb on - strand at 261.596 kb on - strand at 261.624 kb on - strand at 261.752 kb on + strand, within Shewana3_0233 at 261.755 kb on - strand, within Shewana3_0233 at 261.824 kb on + strand, within Shewana3_0233 at 261.854 kb on - strand, within Shewana3_0233
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 259,512 - -1.2 259,572 + -2.1 259,734 + Shewana3_0230 0.30 -2.6 259,742 + Shewana3_0230 0.31 -2.3 259,789 - Shewana3_0230 0.38 -0.3 259,799 + Shewana3_0230 0.39 -0.6 259,932 + Shewana3_0230 0.58 -0.9 259,937 + Shewana3_0230 0.59 -1.3 259,940 - Shewana3_0230 0.60 -3.2 260,172 + -0.3 260,201 - -1.6 260,226 + -2.5 260,234 - -0.3 260,307 - Shewana3_0231 0.12 -1.9 260,451 + Shewana3_0231 0.34 -1.1 260,537 + Shewana3_0231 0.47 -2.3 260,593 + Shewana3_0231 0.56 -2.1 260,696 + Shewana3_0231 0.72 -2.1 260,697 - Shewana3_0231 0.72 -1.1 260,697 - Shewana3_0231 0.72 -1.8 260,700 + Shewana3_0231 0.72 -3.7 260,704 - Shewana3_0231 0.73 -3.0 260,708 - Shewana3_0231 0.74 -3.4 260,708 - Shewana3_0231 0.74 -3.9 260,835 - +0.7 260,846 + -1.3 260,955 - -0.2 260,955 - -0.2 260,993 + +0.6 261,129 + +0.1 261,130 + -0.1 261,147 - -0.5 261,246 - Shewana3_0232 0.14 -0.3 261,302 + Shewana3_0232 0.32 -0.9 261,302 - Shewana3_0232 0.32 +0.4 261,302 - Shewana3_0232 0.32 -1.0 261,391 + Shewana3_0232 0.62 -1.0 261,391 + Shewana3_0232 0.62 -1.2 261,391 + Shewana3_0232 0.62 -1.4 261,391 + Shewana3_0232 0.62 -0.9 261,391 + Shewana3_0232 0.62 -0.4 261,391 + Shewana3_0232 0.62 -1.5 261,391 + Shewana3_0232 0.62 -1.2 261,391 + Shewana3_0232 0.62 -1.7 261,391 + Shewana3_0232 0.62 -0.9 261,391 + Shewana3_0232 0.62 -1.4 261,399 - Shewana3_0232 0.65 +1.4 261,399 - Shewana3_0232 0.65 +0.1 261,399 - Shewana3_0232 0.65 +0.5 261,399 - Shewana3_0232 0.65 -3.3 261,399 - Shewana3_0232 0.65 -1.0 261,399 - Shewana3_0232 0.65 -0.2 261,399 - Shewana3_0232 0.65 -0.3 261,401 + Shewana3_0232 0.65 -0.3 261,401 + Shewana3_0232 0.65 -1.0 261,548 - +0.2 261,565 + -2.2 261,573 - -0.0 261,596 - +0.1 261,624 - +0.4 261,752 + Shewana3_0233 0.13 +0.1 261,755 - Shewana3_0233 0.13 -0.4 261,824 + Shewana3_0233 0.19 -0.7 261,854 - Shewana3_0233 0.21 +0.4
Or see this region's nucleotide sequence