Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0125 and Shewana3_0126 are separated by 101 nucleotides Shewana3_0126 and Shewana3_0127 are separated by 60 nucleotides Shewana3_0127 and Shewana3_0128 are separated by 41 nucleotides Shewana3_0128 and Shewana3_0129 are separated by 25 nucleotides
Shewana3_0125: Shewana3_0125 - chorismate lyase (RefSeq), at 142,187 to 142,750
_0125
Shewana3_0126: Shewana3_0126 - flagellar basal body-associated protein FliL-like protein (RefSeq), at 142,852 to 143,262
_0126
Shewana3_0127: Shewana3_0127 - putative SAM-dependent methyltransferase (RefSeq), at 143,323 to 144,417
_0127
Shewana3_0128: Shewana3_0128 - hypothetical protein (RefSeq), at 144,459 to 144,755
_0128
Shewana3_0129: Shewana3_0129 - response regulator receiver protein (RefSeq), at 144,781 to 145,443
_0129
Position (kb)
143
144
145 Strain fitness (log2 ratio)
-1
0
1 at 142.393 kb on + strand, within Shewana3_0125 at 142.508 kb on + strand, within Shewana3_0125 at 142.508 kb on + strand, within Shewana3_0125 at 142.516 kb on - strand, within Shewana3_0125 at 142.576 kb on - strand, within Shewana3_0125 at 142.663 kb on + strand, within Shewana3_0125 at 142.730 kb on + strand at 142.737 kb on - strand at 142.837 kb on + strand at 142.889 kb on + strand at 142.949 kb on - strand, within Shewana3_0126 at 143.019 kb on + strand, within Shewana3_0126 at 143.217 kb on + strand, within Shewana3_0126 at 143.456 kb on - strand, within Shewana3_0127 at 143.475 kb on - strand, within Shewana3_0127 at 143.485 kb on - strand, within Shewana3_0127 at 143.507 kb on - strand, within Shewana3_0127 at 143.818 kb on + strand, within Shewana3_0127 at 143.862 kb on + strand, within Shewana3_0127 at 143.887 kb on + strand, within Shewana3_0127 at 143.977 kb on + strand, within Shewana3_0127 at 144.017 kb on - strand, within Shewana3_0127 at 144.107 kb on - strand, within Shewana3_0127 at 144.107 kb on - strand, within Shewana3_0127 at 144.126 kb on - strand, within Shewana3_0127 at 144.200 kb on + strand, within Shewana3_0127 at 144.380 kb on - strand at 144.380 kb on - strand at 144.486 kb on - strand at 144.821 kb on - strand at 144.903 kb on - strand, within Shewana3_0129 at 144.903 kb on - strand, within Shewana3_0129 at 145.275 kb on + strand, within Shewana3_0129 at 145.288 kb on - strand, within Shewana3_0129 at 145.348 kb on + strand, within Shewana3_0129 at 145.351 kb on - strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.353 kb on + strand, within Shewana3_0129 at 145.362 kb on - strand, within Shewana3_0129 at 145.399 kb on + strand at 145.399 kb on + strand at 145.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 142,393 + Shewana3_0125 0.37 -0.7 142,508 + Shewana3_0125 0.57 -0.4 142,508 + Shewana3_0125 0.57 +0.5 142,516 - Shewana3_0125 0.58 +0.3 142,576 - Shewana3_0125 0.69 -0.1 142,663 + Shewana3_0125 0.84 -0.2 142,730 + -0.9 142,737 - -0.6 142,837 + -0.3 142,889 + +0.9 142,949 - Shewana3_0126 0.24 +0.8 143,019 + Shewana3_0126 0.41 +0.7 143,217 + Shewana3_0126 0.89 +1.3 143,456 - Shewana3_0127 0.12 -0.1 143,475 - Shewana3_0127 0.14 -0.1 143,485 - Shewana3_0127 0.15 -0.2 143,507 - Shewana3_0127 0.17 +0.1 143,818 + Shewana3_0127 0.45 +0.1 143,862 + Shewana3_0127 0.49 -0.2 143,887 + Shewana3_0127 0.52 +0.1 143,977 + Shewana3_0127 0.60 +0.4 144,017 - Shewana3_0127 0.63 -0.0 144,107 - Shewana3_0127 0.72 -0.2 144,107 - Shewana3_0127 0.72 +0.2 144,126 - Shewana3_0127 0.73 +0.3 144,200 + Shewana3_0127 0.80 +0.4 144,380 - -0.5 144,380 - +0.1 144,486 - +0.2 144,821 - -0.7 144,903 - Shewana3_0129 0.18 -0.4 144,903 - Shewana3_0129 0.18 +0.3 145,275 + Shewana3_0129 0.75 +0.2 145,288 - Shewana3_0129 0.76 +0.1 145,348 + Shewana3_0129 0.86 -0.3 145,351 - Shewana3_0129 0.86 -0.4 145,353 + Shewana3_0129 0.86 -0.5 145,353 + Shewana3_0129 0.86 -0.2 145,362 - Shewana3_0129 0.88 -0.9 145,399 + -0.3 145,399 + -1.0 145,414 - -0.4
Or see this region's nucleotide sequence